Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C24
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    54   2e-08
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    26   6.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   6.5  

>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 32/51 (62%)
 Frame = +2

Query: 446 CL*XDIDNLMKYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLGCIARVLSDR 598
           C   +IDN++ +IY+G   P   +S  LL WH+K   + G+GCI RVL+ R
Sbjct: 99  CSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIVRVLNSR 149


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 505 WKFKAFIDILHKII-YIXLKTNFQLLPLFVQI 413
           W F AFI +L+ +  +  L TNF  +P+F  I
Sbjct: 66  WHFYAFISLLNPLFTFFILNTNFP-IPIFKNI 96


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 656 DKGLIDWLSRVVFIIITLSFCLKELLLY 573
           D G+I W +R +  +I   FCL  +L Y
Sbjct: 285 DAGIILWANRHLAYVIVAGFCLYFILSY 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,746
Number of Sequences: 5004
Number of extensions: 62918
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)