Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C24
         (911 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0084 + 19899972-19900075,19900187-19900259,19900343-199004...    38   0.011
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    33   0.42 
09_02_0481 - 9772783-9773985                                           29   6.8  

>11_06_0084 +
           19899972-19900075,19900187-19900259,19900343-19900443,
           19901502-19901637
          Length = 137

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 464 DNLMKYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLGCIARVLSD 595
           D LMKY+Y+G       +    L  H+K     GLGCI R L+D
Sbjct: 89  DILMKYLYRGLSTGDRPTCDQCLKIHEKLTEKAGLGCILRSLAD 132


>09_04_0435 - 17545879-17546605,17546721-17546782,17547123-17547335,
            17547506-17547590,17547904-17548061,17548174-17548294,
            17548765-17548927,17548973-17549097,17550800-17550888,
            17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 199  IDQYNEDNFKEDEAEQAGPTGPDEGEVCSLL--NQGRHIDALKLVLNNAPLGSSNQQVKE 372
            +DQ  E         QAG  G DEG+V      NQG+H D+ +    ++ + SSN+++ E
Sbjct: 848  VDQAAEVEMLHQHQHQAGRGGWDEGDVMPFFYSNQGKHHDSSR----SSNISSSNRKLTE 903

Query: 373  NALTL 387
               T+
Sbjct: 904  QRRTI 908


>09_02_0481 - 9772783-9773985
          Length = 400

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 356 LDDPSGALFNTSLSASICLP*FNNEHTSPSSGPVGPAC 243
           +++  G + NT          F NEH  P + P+GP C
Sbjct: 131 IEESHGLIINTFHGLEAPYIKFWNEHVGPRAWPIGPLC 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,949
Number of Sequences: 37544
Number of extensions: 346537
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)