Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C24
(911 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 comple... 61 9e-10
U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL110477-17|CAJ43446.1| 332|Caenorhabditis elegans Hypothetical... 30 2.0
AL110477-16|CAB54324.2| 235|Caenorhabditis elegans Hypothetical... 30 2.0
Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonin... 28 8.1
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 8.1
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 8.1
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 8.1
AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 complex
component protein 7 protein.
Length = 152
Score = 61.3 bits (142), Expect = 9e-10
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 190 KIDIDQYNEDNFKE-DEAEQAGPTGPDEGEVCSLLNQGRHIDALKLVLNNAPLGSSNQQV 366
K+D+D ++ + + E DE GPDE V L+ R DAL L + PL + +Q V
Sbjct: 12 KLDVDSFDPEQYDENDETVDTPGLGPDERAVQGFLSSNRLEDALHAALLSPPLKTKDQNV 71
Query: 367 KENALTLTLKVLLAIKSAQIEEAVGSLSL 453
K+ A L KVL + K+A+IE V LS+
Sbjct: 72 KDRATQLVTKVLQSFKNAEIEATVQKLSI 100
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 464 DNLMKYIYKGFEFPSEGS-SGHLLLWHDKAYSVGGLGCIARVLSDRMRV 607
D LMKY+YK E ++ + LL WH + + G G I RV S R R+
Sbjct: 104 DILMKYVYKSMEIGADAAVCQSLLAWHAQLVAKFGHGAIMRVFSGRQRL 152
>U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical
protein C46H11.3 protein.
Length = 146
Score = 54.4 bits (125), Expect = 1e-07
Identities = 32/87 (36%), Positives = 48/87 (55%)
Frame = +1
Query: 190 KIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDALKLVLNNAPLGSSNQQVK 369
K ++D ++ +F ED E++ GP+ EV L R AL+ VL N P G S Q++K
Sbjct: 8 KYNVDIFHPAHF-EDIQEESADCGPNVQEVRQFLESNRLEYALQSVLLNPPFGHSEQELK 66
Query: 370 ENALTLTLKVLLAIKSAQIEEAVGSLS 450
A+ L +V+ A + IEE+V LS
Sbjct: 67 NRAVLLVAEVIHAFRQTDIEESVHKLS 93
Score = 45.6 bits (103), Expect = 5e-05
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 464 DNLMKYIYKGFEFPSEGSSG-HLLLWHDKAYSVGGLGCIARVLSDRMRV 607
D LMKYIYK + S+ ++ LLLWH + S G G I RVLS+R R+
Sbjct: 98 DILMKYIYKAMQLCSDSATCLSLLLWHSQLVSKFGQGSIVRVLSNRQRL 146
>AL110477-17|CAJ43446.1| 332|Caenorhabditis elegans Hypothetical
protein Y113G7B.1b protein.
Length = 332
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 461 IDNLMKYIYKGFEFPSEGSSGHLLLWHDKA---YSVGGLGCIARVLSDRMR 604
+DN K I+K + S +L+L HDK+ Y G GCIAR RMR
Sbjct: 63 VDN-KKPIFKNVKVYSVVGGYNLVLGHDKSTIFYDSKGSGCIARCDGRRMR 112
>AL110477-16|CAB54324.2| 235|Caenorhabditis elegans Hypothetical
protein Y113G7B.1a protein.
Length = 235
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 461 IDNLMKYIYKGFEFPSEGSSGHLLLWHDKA---YSVGGLGCIARVLSDRMR 604
+DN K I+K + S +L+L HDK+ Y G GCIAR RMR
Sbjct: 63 VDN-KKPIFKNVKVYSVVGGYNLVLGHDKSTIFYDSKGSGCIARCDGRRMR 112
>Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical
protein T12A7.6 protein.
Length = 402
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 452 KDKLPTASSICADLIASNTFKVRV 381
KDK+PT S IC+ I ++ F+ R+
Sbjct: 28 KDKVPTLSEICSSSITTSLFQNRI 51
>Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 856
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 283 SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSL 447
+++ +GR++D + + + N +N LT +K+L + S + E VG L
Sbjct: 21 AIVYRGRYVDRTDVPVAIKAIAKKNISKSKNLLTKEIKILKELSSLKHENLVGLL 75
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 476 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 571
KY ++G +FPS +G +L H+ GG G
Sbjct: 241 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 272
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 476 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 571
KY ++G +FPS +G +L H+ GG G
Sbjct: 291 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 322
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 476 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 571
KY ++G +FPS +G +L H+ GG G
Sbjct: 368 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 399
>AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical
protein Y60A3A.1 protein.
Length = 856
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 283 SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSL 447
+++ +GR++D + + + N +N LT +K+L + S + E VG L
Sbjct: 21 AIVYRGRYVDRTDVPVAIKAIAKKNISKSKNLLTKEIKILKELSSLKHENLVGLL 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,592
Number of Sequences: 27780
Number of extensions: 348397
Number of successful extensions: 670
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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