Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C20
         (1341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.63 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.63 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   7.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
 Frame = +2

Query: 1070 PPPXXXFXPXXXP-GXSXXXXPRLLSXXIXQXNXPPPXPPKXNPXTPXPXXSPDKXPLXR 1246
            P P     P   P G      P + +  +   +  PP P       P P  S    P+ +
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183

Query: 1247 SXXXQXPRPXXXXAXAPTTPPXAXSAXPLPP 1339
                  P P    + AP  P  +    P+PP
Sbjct: 1184 PAAGVPPVP--PPSEAPPVPKPSVGVPPVPP 1212


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
 Frame = +2

Query: 1169 PPPXPPKXNPXTPXPXXSPDKXPLXRSXXXQXPRPXXXXAXA----PTTPPXAXSA 1324
            PPP PP     TP P   P   P         P P    A A    P  PP A SA
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = +2

Query: 1169 PPPXPPKXNPXTPXPXXSPDKXPLXRSXXXQXPRPXXXXAXAPTTPPXAXSAXPLPP 1339
            P P  P  +P +  P   P K P   S      +P       P+ P    +  P+PP
Sbjct: 145  PRPSIPPPSPASAPPI--PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/57 (29%), Positives = 19/57 (33%)
 Frame = +2

Query: 1169 PPPXPPKXNPXTPXPXXSPDKXPLXRSXXXQXPRPXXXXAXAPTTPPXAXSAXPLPP 1339
            PPP PP        P  +        S     P P    A +   PP   SA P PP
Sbjct: 312  PPPPPPSRRNRGKPPIGNGSSNS---SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
 Frame = +2

Query: 1169 PPPXPPKXNPXTPX--PXXSPDKXPLXRSXXXQXPRPXXXXAX------APTTPPXAXSA 1324
            PP  PP   P  P   P  +P   PL  S     P P    A       AP  PP    A
Sbjct: 424  PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483

Query: 1325 XPLP 1336
               P
Sbjct: 484  PAAP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,958
Number of Sequences: 5004
Number of extensions: 28808
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 737243038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)