Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C19
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   6.0  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    26   7.9  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    26   7.9  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 414 IIHKNKLYAVTFLNEDLKSKHKFESQIITRTKTPLQTSNLKTFI 283
           II  NKL   +   ED KSK+   + ++  +KTP + + +K  I
Sbjct: 325 IIDANKLSGPSIEAEDAKSKNARLALLLNLSKTPTRETLIKDAI 368


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 526 YFKPCHGFRGISHLKYNRS 582
           Y KP H  +G++HLKY RS
Sbjct: 81  YGKPVH--QGVNHLKYQRS 97


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 526 YFKPCHGFRGISHLKYNRS 582
           Y KP H  +G++HLKY RS
Sbjct: 81  YGKPVH--QGVNHLKYQRS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,442
Number of Sequences: 5004
Number of extensions: 60572
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)