Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C18
(932 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0011 + 90859-91169,92075-92622,92701-92803,92899-92998,934... 169 4e-42
11_01_0011 + 95001-95311,96217-96764,96843-96945,97041-97140,975... 169 4e-42
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 51 2e-06
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 46 4e-05
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 45 1e-04
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 32 0.57
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983... 32 0.75
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731... 29 4.0
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 29 5.3
04_03_0629 + 18179065-18179148,18180146-18180287,18180987-181810... 29 7.0
>12_01_0011 +
90859-91169,92075-92622,92701-92803,92899-92998,
93453-93529,93608-93686,94108-94226,94330-94423
Length = 476
Score = 169 bits (410), Expect = 4e-42
Identities = 99/240 (41%), Positives = 135/240 (56%), Gaps = 4/240 (1%)
Frame = +3
Query: 186 LGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPXXXXXXXXXXXXXXX--SRIC-P 356
+G ++V VRMLAAP+NP+D+N ++G YPV+ LP SR+ P
Sbjct: 168 IGERDVCVRMLAAPINPSDLNRVEGVYPVRPPLPAAVAGYEGVGQVHALGGAVDSRLLSP 227
Query: 357 GNKVIVTKPVQGTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKPVKDG 536
G+ VI + P GTW+ + V ++ AT+TVNP TA RML DF + G
Sbjct: 228 GDWVIPSPPSLGTWQTYIVNPATAWHRVRSDVPPQYVATVTVNPLTALRMLCDFVNLAPG 287
Query: 537 LVVIQNGANSACGQNVIQICKAWGIKNINIVRNRPEINELKKYLECLGATYVLTEEELRS 716
++QNGA S GQ VIQ+ K G+ INI+R+RP E K L+ LGA +V TE +L
Sbjct: 288 DTLVQNGATSIVGQCVIQLAKLHGLHTINIIRDRPGSQEAKDKLKQLGADHVFTESQLDI 347
Query: 717 TNIFK-EKKIDKPSLALNCVGGKKSLEMLRHLQHSGCMVTYGGMSRDPGVNXXHXAFIFK 893
NI + +P+L LNCVGG + +L+ L+ G MVTYGGMS+ P V +FIFK
Sbjct: 348 KNIKSLLGALPEPALGLNCVGGNAASVILKFLRQGGTMVTYGGMSKKP-VTVSTSSFIFK 406
>11_01_0011 +
95001-95311,96217-96764,96843-96945,97041-97140,
97595-97671,97750-97828,98250-98368,98472-98565
Length = 476
Score = 169 bits (410), Expect = 4e-42
Identities = 99/240 (41%), Positives = 135/240 (56%), Gaps = 4/240 (1%)
Frame = +3
Query: 186 LGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPXXXXXXXXXXXXXXX--SRIC-P 356
+G ++V VRMLAAP+NP+D+N ++G YPV+ LP SR+ P
Sbjct: 168 IGERDVCVRMLAAPINPSDLNRVEGVYPVRPPLPAAVAGYEGVGQVHALGGAVDSRLLSP 227
Query: 357 GNKVIVTKPVQGTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKPVKDG 536
G+ VI + P GTW+ + V ++ AT+TVNP TA RML DF + G
Sbjct: 228 GDWVIPSPPSLGTWQTYIVNPATAWHRVRSDVPPQYVATVTVNPLTALRMLCDFVNLAPG 287
Query: 537 LVVIQNGANSACGQNVIQICKAWGIKNINIVRNRPEINELKKYLECLGATYVLTEEELRS 716
++QNGA S GQ VIQ+ K G+ INI+R+RP E K L+ LGA +V TE +L
Sbjct: 288 DTLVQNGATSIVGQCVIQLAKLHGLHTINIIRDRPGSQEAKDKLKQLGADHVFTESQLDI 347
Query: 717 TNIFK-EKKIDKPSLALNCVGGKKSLEMLRHLQHSGCMVTYGGMSRDPGVNXXHXAFIFK 893
NI + +P+L LNCVGG + +L+ L+ G MVTYGGMS+ P V +FIFK
Sbjct: 348 KNIKSLLGALPEPALGLNCVGGNAASVILKFLRQGGTMVTYGGMSKKP-VTVSTSSFIFK 406
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 50.8 bits (116), Expect = 2e-06
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Frame = +3
Query: 177 VPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPXXXXXXXXXXXXXXXSRICP 356
VP L +VLVR A +NP D+ G Y + P +P + +
Sbjct: 52 VPDLKPGDVLVRARAVSINPLDLRMRSG-YGRSIFEPVLPLIIGRDISGEVAATGTSVSS 110
Query: 357 ---GNKVI-VTKP--VQGTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDF 518
G +V P ++GT+ D AI ++D L P L VEA+ + TA+R L
Sbjct: 111 FTIGQEVFGALHPTAIRGTYTDYAILSQDELTSKPSTLSHVEASAIPFAALTAWRALHGT 170
Query: 519 KPVKDGLVVIQNGANSACGQNVIQICKAWG 608
+ +G V+ G A G +Q+ A G
Sbjct: 171 ARISEGQRVLVIGGGGAVGLAAVQLAVAAG 200
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 46.0 bits (104), Expect = 4e-05
Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 1/147 (0%)
Frame = +3
Query: 177 VPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVP-XXXXXXXXXXXXXXXSRIC 353
+PP G EVLV + AA VN AD QG+YP P SR
Sbjct: 24 LPPPGEGEVLVGVSAAGVNRADTVQRQGRYPAPPGASPYPGLECSGTILALGPNVPSRWA 83
Query: 354 PGNKVIVTKPVQGTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKPVKD 533
G++V G + + + L VP+ + +AA L CT + + +
Sbjct: 84 VGDQVCALLS-SGGYAEKVVVPAGQLLPVPEGVSLTDAAGLPEVACTVWSTVFVTSHLSP 142
Query: 534 GLVVIQNGANSACGQNVIQICKAWGIK 614
+ +G +S G IQI K GIK
Sbjct: 143 SESFLIHGGSSGIGTFAIQIAKHLGIK 169
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 44.8 bits (101), Expect = 1e-04
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 11/239 (4%)
Frame = +3
Query: 177 VPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVN-LPCVPXXXXXXXXXXXXXXXSRIC 353
VP + +VLVR+ AA +NP D GK+ + LP VP +
Sbjct: 104 VPDIADDQVLVRVAAAALNPVDAKRRAGKFKATDSPLPTVPGYDVAGVVVKAGRKVKGLK 163
Query: 354 PGNKV---IVTKPVQ-----GTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRML 509
G++V I K ++ G+ + + +L + P +LG +AA L + TA+ L
Sbjct: 164 EGDEVYGNISEKALEGPKQSGSLAEYTAVEEKLLALKPKSLGFAQAAGLPLAIETAHEGL 223
Query: 510 SDFKPVKDGLVVIQNGANSACGQNVIQICK-AWGIKNINIVRNRPEINELKKYLECLGAT 686
++I GA G IQ+ K +G + + P++ LK LGA
Sbjct: 224 ERAGFSAGKSILILGGAGGV-GSLAIQLAKHVYGASKVAATASTPKLELLKS----LGAD 278
Query: 687 YVLTEEELRSTNIFKEKKIDKPSLALNCVG-GKKSLEMLRHLQHSGCMVTYGGMSRDPG 860
+ + N E DK + L+ VG G+K++++++ G +V G PG
Sbjct: 279 VAI---DYTKENF--EDLPDKYDVVLDAVGQGEKAVKVVK---EGGSVVVLTGAVVPPG 329
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 32.3 bits (70), Expect = 0.57
Identities = 29/115 (25%), Positives = 49/115 (42%)
Frame = +3
Query: 390 GTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSA 569
G + + + L V+P++L E+A L TAY L ++ G V G
Sbjct: 192 GGLAEYCVVPANALAVLPNSLPYTESAILGCAVFTAYGALRHAAEMRAGDSVAVIGVGGV 251
Query: 570 CGQNVIQICKAWGIKNINIVRNRPEINELKKYLECLGATYVLTEEELRSTNIFKE 734
G + +QI KA+G + V ++E + LGAT+ + + + KE
Sbjct: 252 -GSSCLQIAKAFGASEVIAV---DVLDEKLQNARTLGATHTVNAAKEDAVEKIKE 302
>10_08_0923 +
21597593-21597629,21598089-21598135,21598253-21598391,
21598449-21598562,21599206-21599432,21599578-21599835,
21600014-21600304,21600766-21600830,21601116-21601299,
21601857-21601964
Length = 489
Score = 31.9 bits (69), Expect = 0.75
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 2/158 (1%)
Frame = +3
Query: 390 GTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSA 569
GT+ + I + +P ++ + AA++ + T Y ++ ++ G V+ + A
Sbjct: 144 GTYTEEQIIPATLAIPIPPSVDHITAASVLLKGMTTYVLVKQAFKIQAGHTVLVHAAAGG 203
Query: 570 CGQNVIQICKAWGIKNINIVRNRPEINELKKYLECLGATYVLTEEEL--RSTNIFKEKKI 743
G + Q A G I V + + + + + + TEE+ + I K +
Sbjct: 204 VGSLLCQWANALGATVIGTVSTQEKAIQAAE--DGCHHVIIYTEEDFVAQVAEITSRKGV 261
Query: 744 DKPSLALNCVGGKKSLEMLRHLQHSGCMVTYGGMSRDP 857
+ + VG + L GCM++YG S P
Sbjct: 262 ---HVVYDAVGKDTFKGSMECLMPRGCMISYGQCSGRP 296
>01_05_0502 +
22771428-22771466,22772327-22772430,22773043-22773129,
22773212-22773287,22773393-22773467,22773639-22773692,
22773745-22773918,22774002-22774061,22774135-22774251,
22774448-22774542,22774811-22775013,22775177-22775274,
22775451-22775587,22776154-22776219,22776300-22776465,
22776537-22776659,22776763-22776845,22776943-22777084,
22777334-22777363,22777587-22777657,22777742-22778333
Length = 863
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 582 VIQICKAWGIKNINIVRNRPEINELKKYL 668
+IQ CKA + IN +R+R ++ +L +Y+
Sbjct: 34 IIQECKALNTRLINFLRDRAQVEQLLRYV 62
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 519 KPVKDGLVVIQNGANSACGQNVIQICKAWGIKNINIVRNRPEINE 653
+PV DG + +QNG N A +++ ++ GI I N P I E
Sbjct: 752 QPVSDGHIPLQNGDNCADFDETVEVHQSCGIP---IPANSPTIKE 793
>04_03_0629 +
18179065-18179148,18180146-18180287,18180987-18181078,
18181272-18181964
Length = 336
Score = 28.7 bits (61), Expect = 7.0
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 8/149 (5%)
Frame = +3
Query: 177 VPPLGSQEVLVRMLAAPVNPADINTIQG--KYPVKVNLPCVPXXXXXXXXXXXXXXXSRI 350
VP EVL+++ AA +NP D +G + + LP +P +
Sbjct: 34 VPSAKKNEVLLKLEAATINPVDWKIQKGMLRPLLPRRLPFIPVTDVAGVVAGVGPGVNDF 93
Query: 351 CPGNKVI--VTKPVQGTWRDIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKP 524
G++V+ + G + A+ ++ N+ E A L + TA + L
Sbjct: 94 AVGDQVVAMLNSMNGGGLAEYAVAAANLTVKRTPNVSAAEGAGLPIAAGTALQALRSIGA 153
Query: 525 VKDG----LVVIQNGANSACGQNVIQICK 599
DG L V+ A+ G +Q+ K
Sbjct: 154 KFDGTGEPLNVLVTAASGGVGLYAVQLAK 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,509,304
Number of Sequences: 37544
Number of extensions: 454131
Number of successful extensions: 977
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -