Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C18
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.56 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   6.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 540 VVIQNGANSACGQNVIQICKAWGIKNINIVRNRPEINELKKYLE 671
           V +  GANS  G+ +I+     G+K I I    P+++++K  +E
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMKVIGIA---PQVDKMKTLVE 49


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 356 RTYSTDFFTYLFNNSNSFISRHTR 285
           R   TD+   L +NS SF+S H+R
Sbjct: 110 RELQTDYDRRLHDNSPSFLSDHSR 133


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 860 CQXXTSGIYFQKIFPFFWDF 919
           CQ   + IY  K+  FF+ F
Sbjct: 350 CQGRATAIYIDKVSRFFFPF 369


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = +3

Query: 402  DIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACGQN 581
            D A  + +V    P  +  ++   + +NP T YR+    +   DG++     +++    +
Sbjct: 823  DTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 882

Query: 582  VIQICKA 602
                C+A
Sbjct: 883  GAYFCQA 889


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = +3

Query: 402  DIAIFNKDVLRVVPDNLGTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACGQN 581
            D A  + +V    P  +  ++   + +NP T YR+    +   DG++     +++    +
Sbjct: 819  DTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 878

Query: 582  VIQICKA 602
                C+A
Sbjct: 879  GAYFCQA 885


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 586 MTFCPHALLAPFWITTRPSLTGLKSDSIL*AVHGFTVSVA 467
           + FC   ++ PF+    PSL+ L +D+ L  +  F V+ A
Sbjct: 46  LPFCGPNVINPFFCDMSPSLSLLCADTRLNKLAVFIVAGA 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,521
Number of Sequences: 438
Number of extensions: 4995
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)