Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C13
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical pr... 73 3e-13
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 30 1.9
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 4.3
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 4.3
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 29 4.3
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 29 4.3
Z69360-6|CAA93282.1| 599|Caenorhabditis elegans Hypothetical pr... 28 7.5
U23526-5|AAB36850.1| 391|Caenorhabditis elegans Acyltransferase... 28 9.9
>Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical
protein C06H2.1 protein.
Length = 191
Score = 72.9 bits (171), Expect = 3e-13
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Frame = +1
Query: 103 AKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVP 282
AKR++ S+VNW+ LAER+ E A L K S + V P + PKI++A K+A+P
Sbjct: 5 AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64
Query: 283 I-PGMVDTFQKQYEALKIPYPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEIN 456
++D+ QKQYE++KIPY L E QW NA + A+ K++
Sbjct: 65 AHSAVLDSLQKQYESVKIPYGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVE 124
Query: 457 ATKALLP----YDQMTMEDFYDAH 516
A P +D+ +++ AH
Sbjct: 125 EKWAKAPPVEHFDRQHFVEYFPAH 148
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +1
Query: 115 SQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGM 294
+++ W A + P + + ++ SD LR V +NP + I+W + +
Sbjct: 299 TENTTGWRAFSSTSPNPTSSRV--WQYLSDTPLRVVTSNPTDLENISWTELNEQPYV--N 354
Query: 295 VDTFQKQYEALKIPYPA 345
+D + Y+ +++P PA
Sbjct: 355 LDRLKTIYDVVEVPQPA 371
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 163 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 300
E K+ A+ ++D + R ANP PPK+ A K+ P+P D
Sbjct: 170 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 213
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 163 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 300
E K+ A+ ++D + R ANP PPK+ A K+ P+P D
Sbjct: 367 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 410
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 427 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 594
N+ S ++ A K + + ME+ + HP+ +D + KP QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 427 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 594
N+ S ++ A K + + ME+ + HP+ +D + KP QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270
>Z69360-6|CAA93282.1| 599|Caenorhabditis elegans Hypothetical
protein F25H8.6 protein.
Length = 599
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/85 (20%), Positives = 39/85 (45%)
Frame = +1
Query: 271 QAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKE 450
Q + PG+ F+ +P Q +V NQ+K I+A + S++ + +
Sbjct: 375 QIIDRPGIRSLFKFVLPEYHMPSGDVFQATIVPQLLNQMKQQIEALVHNSSSLSSIPDQV 434
Query: 451 INATKALLPYDQMTMEDFYDAHPDL 525
+ ++ A Y+ +++ + A P++
Sbjct: 435 MTSSSATSSYEDVSVNESQMAGPNV 459
>U23526-5|AAB36850.1| 391|Caenorhabditis elegans
Acyltransferase-like protein 12 protein.
Length = 391
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 358 ALVESQWNQVKNAIDAFIQESNANIASYQKE 450
A+V + WN V + A + E N+A Y +E
Sbjct: 86 AMVNAHWNAVSVFVGATVTEYGTNLAGYAEE 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,257,183
Number of Sequences: 27780
Number of extensions: 386677
Number of successful extensions: 1139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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