Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C12
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 65 1e-11
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 63 5e-11
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 59 7e-10
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 3.7
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 3.7
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 3.7
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 3.7
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 3.7
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 6.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.4
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 65.3 bits (152), Expect = 1e-11
Identities = 35/95 (36%), Positives = 49/95 (51%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 362
D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGSG
Sbjct: 17 DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGA--GAAPVAGG 74
Query: 363 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SD+DMGFGLFD
Sbjct: 75 AAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 63.3 bits (147), Expect = 5e-11
Identities = 34/95 (35%), Positives = 48/95 (50%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 362
D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGS
Sbjct: 17 DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAA-AAPAAGGAG 75
Query: 363 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SD+DMGFGLFD
Sbjct: 76 APAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 59.3 bits (137), Expect = 7e-10
Identities = 32/95 (33%), Positives = 47/95 (49%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 362
D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+ NIGS
Sbjct: 17 DEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSA--GAASAPTAA 74
Query: 363 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SD+DMGFGLFD
Sbjct: 75 GAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 435 SDDDMGFGLFD 467
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 435 SDDDMGFGLFD 467
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 435 SDDDMGFGLFD 467
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 328 PEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSSQDESR 164
PE L L + + ++ Y STS +A+ V S +++ SSS SR
Sbjct: 486 PEASLTSFGNFLGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 435 SDDDMGFGLFD 467
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 165 LLSSWLDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 314
+L++ D A++ E+IS IL + +W AL G+N++D I+
Sbjct: 122 VLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 885 PXPGXGPVXXXEXPPTPPPG 826
P P P+ PP PPPG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,327
Number of Sequences: 5004
Number of extensions: 36211
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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