Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C12
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    70   2e-12
11_01_0483 - 3718104-3718802,3718817-3719308                           31   1.3  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    31   1.3  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.2  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     30   2.2  
11_01_0340 + 2534998-2535660                                           29   3.8  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   8.9  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 39/95 (41%), Positives = 48/95 (50%)
 Frame = +3

Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 362
           DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI ++GSG           
Sbjct: 17  DDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG-GGAAPVAAAA 75

Query: 363 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
                                   SDDDMGF LFD
Sbjct: 76  APAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>11_01_0483 - 3718104-3718802,3718817-3719308
          Length = 396

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 94  LRPTATCTFKTKNGVKS*ISMCLLCSHPGWMMMLP 198
           LRP AT T    +GV    +      +PGW+M++P
Sbjct: 4   LRPVATATATLPSGVPPPAAAAAARGYPGWVMLMP 38


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 885 PXPGXGPVXXXEXPPTPPP 829
           P PG GPV   + PP PPP
Sbjct: 245 PPPGQGPVLPRDAPPMPPP 263


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 885 PXPGXGPVXXXEXPPTPPPGPXXXXKPLF 799
           P P   P      PP PPPGP    +P F
Sbjct: 42  PPPQGAPPPFLAPPPPPPPGPPPPHQPQF 70


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 879 PGXGPVXXXEXPPTPPPGPXXXXKPL 802
           P  GP    + PPTPPP P     PL
Sbjct: 183 PAQGPGFYMQRPPTPPPTPRGFPPPL 208


>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 289 PSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSSQDESRVNTC 152
           P+ + ++     GS S AAA +  E  SP +++SSS     R ++C
Sbjct: 58  PTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSC 103


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 879 PGXGPVXXXEXPPTPPPGPXXXXKPLF 799
           P   P      PP PPP P    KP F
Sbjct: 535 PSPSPTAAAPPPPPPPPPPPSGNKPAF 561


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,781
Number of Sequences: 37544
Number of extensions: 292833
Number of successful extensions: 1640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)