Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C12
(905 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 77 9e-14
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 77 9e-14
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 77 9e-14
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 77 9e-14
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 77 9e-14
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 75 4e-13
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 75 5e-13
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 26 2.9
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 26 2.9
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 77.0 bits (181), Expect = 9e-14
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 356
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 357 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 77.0 bits (181), Expect = 9e-14
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 356
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 357 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 77.0 bits (181), Expect = 9e-14
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 356
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 357 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 77.0 bits (181), Expect = 9e-14
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 356
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 357 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 77.0 bits (181), Expect = 9e-14
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 356
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 357 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 74.9 bits (176), Expect = 4e-13
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 356
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI ++G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPA 77
Query: 357 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 74.5 bits (175), Expect = 5e-13
Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 356
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 357 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLF 464
SDDDMGFGLF
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF 113
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 26.2 bits (55), Expect(2) = 2.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 846 PPTPPPGPXXXXKPL 802
PP PPPGP +PL
Sbjct: 73 PPPPPPGPAVAEEPL 87
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 885 PXPGXGPVXXXEXPPTPPPGP 823
P P P+ PP PPP P
Sbjct: 56 PPPQAQPLLPQPQPPPPPPPP 76
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 26.2 bits (55), Expect(2) = 2.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 846 PPTPPPGPXXXXKPL 802
PP PPPGP +PL
Sbjct: 73 PPPPPPGPAVAEEPL 87
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 885 PXPGXGPVXXXEXPPTPPPGP 823
P P P+ PP PPP P
Sbjct: 56 PPPQAQPLLPQPQPPPPPPPP 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,637,558
Number of Sequences: 237096
Number of extensions: 1590732
Number of successful extensions: 5873
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5491
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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