Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C12
         (905 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...   110   3e-24
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...   110   3e-24
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...   110   3e-24
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...   107   2e-23
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    30   5.0  
AE013599-1971|AAF58192.3| 1945|Drosophila melanogaster CG10228-P...    29   6.6  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score =  110 bits (264), Expect = 3e-24
 Identities = 57/96 (59%), Positives = 61/96 (63%)
 Frame = +3

Query: 180 LDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 359
           +DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAA 76

Query: 360 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
                                    SDDDMGFGLFD
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score =  110 bits (264), Expect = 3e-24
 Identities = 57/96 (59%), Positives = 61/96 (63%)
 Frame = +3

Query: 180 LDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 359
           +DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAA 76

Query: 360 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
                                    SDDDMGFGLFD
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score =  110 bits (264), Expect = 3e-24
 Identities = 57/96 (59%), Positives = 61/96 (63%)
 Frame = +3

Query: 180 LDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 359
           +DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAA 76

Query: 360 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
                                    SDDDMGFGLFD
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score =  107 bits (258), Expect = 2e-23
 Identities = 56/96 (58%), Positives = 60/96 (62%)
 Frame = +3

Query: 180 LDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 359
           +DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLITNIGSGVGAAPAGGAA 76

Query: 360 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
                                    SDDDMGFGLFD
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 313 VIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEI-FSPVTATSSSSQDESRVN 158
           +I S+ L+P+K   N P QY  T+   A K  +I FS  +  S     +S  N
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKN 307


>AE013599-1971|AAF58192.3| 1945|Drosophila melanogaster CG10228-PA
           protein.
          Length = 1945

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -2

Query: 307 RSRTLMPSKALANRPGQYGST--STAAAFKMVEIFSPVTATSSSSQD 173
           RSR+  P +  ++R G+ GS+  S++++ K  E  S  T++SSSS D
Sbjct: 344 RSRSKSPVRNSSSRSGKSGSSSHSSSSSRKRSESKSSTTSSSSSSSD 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,072,290
Number of Sequences: 53049
Number of extensions: 475234
Number of successful extensions: 2179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2101
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)