Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C12
(905 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 90 2e-18
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 87 2e-17
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 6.0
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 6.0
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 6.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 26 6.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 26 6.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 26 6.5
U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical pr... 28 8.0
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 90.2 bits (214), Expect = 2e-18
Identities = 46/95 (48%), Positives = 57/95 (60%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 362
DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LIT++ SG
Sbjct: 18 DDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAA 76
Query: 363 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 77 AAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 86.6 bits (205), Expect = 2e-17
Identities = 45/95 (47%), Positives = 56/95 (58%)
Frame = +3
Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 362
DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LIT++ SG
Sbjct: 18 DDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAA 76
Query: 363 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 77 AAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 885 PXPGXGPVXXXEXPPTPPPGPXXXXKPLF 799
P P PV PTPPP P KP F
Sbjct: 157 PPPPPPPVSVPSSKPTPPPPPPAQQKPSF 185
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 435 SDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 435 SDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 435 SDDDMGFGLFD 467
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 26.2 bits (55), Expect(2) = 6.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 903 GAKXXXPXPGXGPVXXXEXPPTPPPG 826
G P PG P PP PPPG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG 749
Score = 20.6 bits (41), Expect(2) = 6.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 846 PPTPPPGPXXXXKPL 802
PP PPPG P+
Sbjct: 785 PPPPPPGMFAPMAPV 799
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 26.2 bits (55), Expect(2) = 6.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 903 GAKXXXPXPGXGPVXXXEXPPTPPPG 826
G P PG P PP PPPG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG 749
Score = 20.6 bits (41), Expect(2) = 6.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 846 PPTPPPGPXXXXKPL 802
PP PPPG P+
Sbjct: 785 PPPPPPGMFAPMAPV 799
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 26.2 bits (55), Expect(2) = 6.5
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 903 GAKXXXPXPGXGPVXXXEXPPTPPPG 826
G P PG P PP PPPG
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPG 332
Score = 20.6 bits (41), Expect(2) = 6.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 846 PPTPPPGPXXXXKPL 802
PP PPPG P+
Sbjct: 368 PPPPPPGMFAPMAPV 382
>U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical
protein F47G3.1 protein.
Length = 886
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -1
Query: 194 NIIIQPG*EQSKHMLIQLLTPFLVLNVQVAVGLSSRENKHV*VLTNKEQNLKE 36
N+ + P + H +++ + PF V V L N + +L NK+Q +
Sbjct: 446 NLTVLPSGALTMHAMVKRVAPFSSATVASLVALEYPANNYTEILINKKQKFSD 498
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 885 PXPGXGPVXXXEXPPTPPPGPXXXXKP 805
P P PV PTPPP P KP
Sbjct: 157 PPPPPPPVSVPSSKPTPPPPPPAQQKP 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,960,932
Number of Sequences: 27780
Number of extensions: 231809
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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