Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C11
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 58 1e-09
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 55 2e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 54 2e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 53 5e-08
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 53 5e-08
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 53 6e-08
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 50 4e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 6e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 50 6e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 48 2e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 2e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 46 5e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 2e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 3e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 40 5e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 39 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.001
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 38 0.002
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.003
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 35 0.013
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.023
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.031
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.031
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.040
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.093
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.093
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 32 0.12
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.22
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.22
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.66
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 28 1.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 2.7
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 27 4.6
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 26 6.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 26 6.1
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = +2
Query: 224 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 403
V NL++ TT E + +F +CGE+ I + DR+T+ GF FV +FE +DA ++L +
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISR 95
Query: 404 RMLDGRELRVQM 439
LD R +R +
Sbjct: 96 TSLDERIIRADL 107
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 54.8 bits (126), Expect = 2e-08
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +2
Query: 218 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 397
L+V NL+ T E+LR +F R G + +Y+ +D+ T ++GFAFV +++R A +A D +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 398 DG 403
DG
Sbjct: 264 DG 265
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +2
Query: 179 TEDLRH--ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 352
TE LR+ ES+ + V N+ Y TPE+L+ F CG V + I D++T +GFA++
Sbjct: 42 TEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101
Query: 353 RFFERRDAEEALDTMDGRMLDGRELRV 433
F E AL ++G ML R L+V
Sbjct: 102 EFSEPSLVPNAL-LLNGSMLHERPLKV 127
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 53.2 bits (122), Expect = 5e-08
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +2
Query: 215 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 394
RL V N+ + T ED++ +FE G++ +++ RD R S+GF ++++ A AL+
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEK 399
Query: 395 MDGRMLDGRELRV 433
M+G L GR +RV
Sbjct: 400 MNGFDLAGRNMRV 412
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +2
Query: 224 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 403
V L R T +L FE+ G V D I RD+ + S+G A+V F D+ +A + G
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFC-HEDSVQAAIALSG 302
Query: 404 RMLDGRELRVQM 439
+ L G + VQ+
Sbjct: 303 KRLLGLPVIVQL 314
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 53.2 bits (122), Expect = 5e-08
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Frame = +2
Query: 215 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESR----GFAFVRFFERRDAEE 382
R+ V L+ T ++R +FE G V + IP R R +R G AFV F + D ++
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 383 ALDTMDGRMLDGRELRVQMA 442
A++T++G+ LD RE+ VQ A
Sbjct: 105 AIETLNGKTLDDREIVVQKA 124
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 326 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 442
R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 52.8 bits (121), Expect = 6e-08
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +2
Query: 215 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 394
RL + NLTY +DL+ +F G++ +++P D+ T +GFA++ F + DA A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 395 MDGRMLDGRELRV 433
+D + GR L V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/77 (28%), Positives = 43/77 (55%)
Frame = +2
Query: 212 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 391
+++ + NL + T +D++ + G++ + +P+ ++ R +RGFAF F R+A A+
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPK-KFDRSARGFAFAEFVTAREAANAMR 779
Query: 392 TMDGRMLDGRELRVQMA 442
+ L GR L +Q A
Sbjct: 780 ALKNTHLLGRHLVLQYA 796
Score = 42.3 bits (95), Expect = 9e-05
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 179 TEDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERC-GEVGDIYIPRDRYTRE----SRGF 343
TED+ ES+ + + V NL + T E+ ++VF+ G + + + R S GF
Sbjct: 610 TEDI--ESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGF 667
Query: 344 AFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 442
FV F ++ A A+ M+G +LDG +L ++++
Sbjct: 668 GFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 50.0 bits (114), Expect = 4e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +2
Query: 224 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 403
+ L+Y T D+ R F R G + I + R++ T +S G+AFV F RD + A G
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAG 163
Query: 404 RMLDGRELRVQM 439
ML+GR + V +
Sbjct: 164 LMLNGRRIVVDV 175
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 49.6 bits (113), Expect = 6e-07
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +2
Query: 224 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 403
V NL + E L R F CG + + I RD T +GFA+++F + ++AL +
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEK 333
Query: 404 RMLDGRELRVQMA 442
+M +GR LR+ A
Sbjct: 334 KMPEGRTLRIMRA 346
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 49.6 bits (113), Expect = 6e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +2
Query: 218 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 397
L V + R ++L+++F + G V + I R+ T+ SRGF F+ F +A A+D +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 398 DGRMLDGRELRVQMA 442
+ + GR L VQ A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +2
Query: 218 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 397
L V L T L +F G V I + RD TR S G+A+V F D E+ALD +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 398 DGRMLDGRELRV 433
+ ++ GR R+
Sbjct: 142 NYTLIKGRPCRI 153
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +2
Query: 218 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 397
L + NL E L+ F G + I D + S+GF FV + +A +A+ M
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEM 424
Query: 398 DGRMLDGRELRVQMA 442
+ RML G+ L V +A
Sbjct: 425 NQRMLAGKPLYVALA 439
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 212 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 391
S L V NL ++T +DL F G + + + T E+RG+ FV F DA+ A
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 392 TMDGRMLDGRELRVQMA 442
+ + L GR LR+ A
Sbjct: 65 ELKNKKLHGRILRLDFA 81
Score = 46.0 bits (104), Expect = 7e-06
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +2
Query: 215 RLKVDNLTYRTT-PEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 391
RL + NL + P+ L F + G+V +I IP R GFAFV +R+ AEEA++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKAAEEAMN 166
Query: 392 TMDGRMLDGRELRVQMA 442
+++G +DGR + V A
Sbjct: 167 SLNGTEIDGRPIAVDWA 183
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +2
Query: 224 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 403
V NL++ T +DL F CG++ I +P D + +GF +V F + A++ ++ M+G
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428
Query: 404 RMLDGRELRVQMA 442
+ GR R+ +
Sbjct: 429 HFIAGRPCRLDFS 441
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +2
Query: 224 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 403
V L++ + L + FE G + + D + S+G+ +V F A+ A+
Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326
Query: 404 RMLDGRELRVQMA 442
+ +DGR + + ++
Sbjct: 327 KEIDGRMVNLDLS 339
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 224 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 403
+ NL + +D+ VF GE DI + RD+ T +S+GFAF+++ ++R A+D M
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTN 94
Query: 404 RMLDGRELRV 433
L R +RV
Sbjct: 95 VKLLDRLVRV 104
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 215 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 394
++ + L + TT + LR FE+ GEV D + RD T SRGF F+ F + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 395 ---MDGRMLD 415
+DG+++D
Sbjct: 224 EHHLDGKIID 233
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = +2
Query: 188 LRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFER 367
+R + + + + NL + T L + + G V +I+IPRDR GF F F
Sbjct: 3 IREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHE 62
Query: 368 RDAEEALDTMDGRMLDGRELRVQMA 442
+D E A ++ L G+ +RV A
Sbjct: 63 QDVEYACQILNQVKLFGKPIRVNRA 87
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.7 bits (91), Expect = 3e-04
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 245 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 424
T EDL +F R G++ + RD+ T +S +AF+ F + E+A M ++D
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR 314
Query: 425 LRVQMA 442
+ V +
Sbjct: 315 IHVDFS 320
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 296 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 442
DI IPR TR SR FAFV + + RDAE+A + GR L+ G LRV+ A
Sbjct: 37 DIPIPR---TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +2
Query: 305 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 442
I D T SRG+ FVRF + D + AL M G++ R +RV +A
Sbjct: 218 IMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 218 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 397
L V N+ ++ +D+ F G+V + IP+ R+ + +GF +V +DAE AL
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK-RF-NQHKGFGYVVMTTNQDAENALSAA 816
Query: 398 DGRMLDGRELRVQMA 442
G+ L R L V ++
Sbjct: 817 -GKQLGNRVLNVVLS 830
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 254 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 421
+D+ E+CG V ++ + Y +E G VRF +AE + M GR DGR
Sbjct: 274 DDITEEAEKCGRVTNVVL----YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 218 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 358
L V NL ++ E L+ F+R G+V + IP D+ + +G+AFV F
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.1 bits (77), Expect = 0.013
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 314 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 442
D T SR + FVRF ++ + AL M G + GR LR+ +A
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.3 bits (75), Expect = 0.023
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +2
Query: 212 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 391
S L + NL+++ T E++ +F R G V I + T ++RG AFV + +DA A +
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGN---TVQTRGTAFVVYENVQDARRACE 68
Query: 392 TMDG 403
+ G
Sbjct: 69 KLSG 72
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +2
Query: 215 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 394
++ + NL + + + + G++ + ++ S+GF F F DAE A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 395 MDGRMLDGRELRVQMA 442
+DG+ G +L Q A
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.031
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 335 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 436
RG AF F+ +A+ + T++G ++GR LRV+
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 33.5 bits (73), Expect = 0.040
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +2
Query: 212 SRLKVDNLTYRTTPEDLRRVFER----CGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 379
S++ V NL T ++ +F + C V Y P R S+G A + F DA
Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGR----SKGIATIIFSRPGDAT 110
Query: 380 EALDTMDGRMLDG-RELRVQM 439
A + +GR++DG R+++V++
Sbjct: 111 RAYEQYEGRLVDGTRKMKVEI 131
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.093
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 212 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 358
S L V NL + TT DL+ F + G++ + + T + +GF FV F
Sbjct: 228 SILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.3 bits (70), Expect = 0.093
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +2
Query: 248 TPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 427
T E + +F G V ++++ DR T +G+A + + A++A+D + +LD +L
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLD-EKL 80
Query: 428 RVQMA 442
V A
Sbjct: 81 EVDFA 85
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.9 bits (69), Expect = 0.12
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 218 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 397
L V L + + +R F + G V + + R+R T S+ +AF+ F A +TM
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 398 DGRMLDGRELRVQM 439
+L G+ L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +2
Query: 215 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 394
RL V+NL+ + +DL+ V + GE D + RE+ G V F D AL +
Sbjct: 99 RLIVENLSEDVSWQDLKDVMRKAGEP----TFTDAH-RENPGAGVVEFSTEEDMRNALTS 153
Query: 395 MDGRMLDGRELRVQ 436
++G ++ G+ + ++
Sbjct: 154 LNGEVIKGQAVTLR 167
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +2
Query: 203 MAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 382
M+ +RL V + + T ED+ F+ G++ D + GF FV + RDA +
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARD 52
Query: 383 ALDTMDGRMLDGRELRVQMA 442
++ G+ G + V+ A
Sbjct: 53 IVNDFQGKEFMGSRIVVEPA 72
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 31.1 bits (67), Expect = 0.22
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +2
Query: 203 MAWSRLKVDNLTYRTTPEDLRR----VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 370
M + L V+NL + DLR +F G V DI + T + RG A V FF+
Sbjct: 1 MNQNTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPS 57
Query: 371 DAEEALDTMDGRMLDGRELRVQMA 442
A A+ + + G+E+++Q A
Sbjct: 58 AAAIAMKALKNFIFFGKEMKIQYA 81
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.66
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +2
Query: 215 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 394
RL V NL E L + F + + RDR + +RGF FV F + +A
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK-TRGFGFVSFKDSDQFLKAWRE 89
Query: 395 MDGRMLDGRELRVQMA 442
+G+ + R +++ A
Sbjct: 90 KNGKYIGSRPVKLSRA 105
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 212 SRLKVDNL--TYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 385
S L V NL T T L +F G + + + S+G+ FV F + A A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 386 LDTMDGRMLDGRELRVQMA 442
DT++G M+ + + V A
Sbjct: 442 KDTLNGMMVGKKRIFVCFA 460
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 272 FERCGEVGDIYIPRDRYTRESRGFA--FVRFFERRDAEEALDTMDGRMLDGRELR 430
F + G++ I I + + G ++ + + DA A+ +DG + DGR LR
Sbjct: 142 FGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLR 196
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 356 FFERRDAEEALDTMDGRMLDGRELRV 433
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 141 KQIE*YNVVKFTLV*HDGVTSVERVQELLQKIKILRNSL 25
+Q E YN ++F LV DG E L K I NSL
Sbjct: 470 RQYEDYNTLEFILVDKDGNNGFPSDLETLVKYTIKNNSL 508
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 254 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 433
ED+ F + GEV + + D G +VRF A+ A+D ++ R R +
Sbjct: 78 EDMFCEFSKYGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYA 136
Query: 434 QMA 442
+++
Sbjct: 137 ELS 139
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 245 TTPEDLRRVFER-CGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 421
T +D+ + R E GDI R SRG AF+ + +A+ A + M + LD
Sbjct: 182 TPTDDIEEIVSRHFAEWGDIERIR---VLNSRGIAFITYLNEANAQFAKEAMAHQSLDHD 238
Query: 422 E-LRVQMA 442
E L V+ A
Sbjct: 239 ECLNVRWA 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,162
Number of Sequences: 5004
Number of extensions: 54390
Number of successful extensions: 196
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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