Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C07
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   6e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.023
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.41 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   0.98 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = +3

Query: 765 GAPPPPPXFXGXCXXPPPPPPPPXFXXXXGG 857
           G PPPPP   G     PPPPPPP      GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 32.7 bits (71), Expect = 0.070
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +3

Query: 723 PPLXFFXXXXXKXXGAPPPPPXFXGXCXXPPPPPPPP 833
           PP              PPP P   G    PPPPPPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGG----PPPPPPPP 768



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 771 PPPPPXFXGXCXXPPPPPPPP 833
           PPPPP        P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPP 753


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 771 PPPPPXFXGXCXXPPPPPP 827
           PPPPP F      PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 33.1 bits (72), Expect = 0.053
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 765 GAPPPPPXFXGXCXXPPPPPPPP 833
           G PPPPP   G      PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 810 PPPPPPPPXF 839
           PPPPPPPP F
Sbjct: 9   PPPPPPPPGF 18


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 810 PPPPPPPPXFXXXXGG 857
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 25.0 bits (52), Expect(2) = 0.41
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 813 PPPPPPPXFXXXXGGG 860
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 0.41
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 810 PPPPPPPP 833
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 810 PPPPPPPP 833
           PPPPPP P
Sbjct: 907 PPPPPPLP 914



 Score = 22.2 bits (45), Expect(2) = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 816 PPPPPPXFXXXXGGGG 863
           PPPPPP        GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 810 PPPPPPPP 833
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 810 PPPPPPPP 833
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 25.4 bits (53), Expect(2) = 0.98
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 768 APPPPPXFXGXCXXPPPPPPP 830
           AP       G    PPPPPPP
Sbjct: 294 APSSGDSANGGLPPPPPPPPP 314



 Score = 21.8 bits (44), Expect(2) = 0.98
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 810 PPPPPPPPXF 839
           PPPPPP   F
Sbjct: 309 PPPPPPSNDF 318


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 723 PPLXFFXXXXXKXXGAPPPPPXFXGXCXXPPPPPPPP 833
           PP  FF                +      PPPPPPPP
Sbjct: 341 PPAPFFPLGFSPHLNDESSRSRWSNISYSPPPPPPPP 377


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
 Frame = +3

Query: 771 PPPPPX--FXGXCXXPP-----PPPPPP 833
           PPPPP     G    PP     PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +3

Query: 768 APPP-PPXFXGXCXXPPPPPPPP 833
           APPP PP   G    PP  PP P
Sbjct: 252 APPPIPPPSNGTVSSPPNSPPRP 274


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 774  PPPPXFXGXCXXPPPPPPPP 833
            PPPP        PP  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 810 PPPPPPPP 833
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 810 PPPPPPPP 833
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 810  PPPPPPPP 833
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,238
Number of Sequences: 5004
Number of extensions: 32244
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)