Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C06
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 111 1e-25
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 31 0.23
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 30 0.40
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.6
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 27 2.8
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 27 3.7
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 4.9
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 27 4.9
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 26 6.5
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.5
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 26 6.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 6.5
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 6.5
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 8.6
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.6
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 8.6
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 8.6
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 111 bits (268), Expect = 1e-25
Identities = 79/267 (29%), Positives = 125/267 (46%), Gaps = 28/267 (10%)
Frame = +1
Query: 202 MGKVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTAR 381
M K K K +A+ ESG + ++ K + + F+ A SKKIL+ AR
Sbjct: 1 MPKAPKTKLHHAPLYKDIAESSESGVLRQKPSKQKKSKESNTGNGFLDAKTSKKILQLAR 60
Query: 382 RQQAELEDNEIGPSPAKHVTLVXXXXXXXXXXXXXXXXXLEPDTY--------------- 516
Q+ EL++ E G P++ + E +
Sbjct: 61 EQKEELDEEENG-KPSQISAFISNGHQKDTLENPAIESSYEESEHARNVSDSESITSQEE 119
Query: 517 --YDNIEINEADEEALKLFKSSKT--------ERVRTLADIIKEKITDKHTELQTQF--- 657
Y+ +EI++AD + F + + E+ +L+D+I +KI + + ++
Sbjct: 120 EEYEELEIDDADRDLFDRFLPTVSGEEGDLTEEKTTSLSDLIMQKINEAEARARGEYIPS 179
Query: 658 SDAETLKLQNIDPRIKTMYEGVRDVLQKYRSGKLPKAFKMVPHLQNWEQILYLTEPTTWS 837
++ E L + P++ +Y V +L KYRSGK+PKAFK++P L NWE ILYLT P W+
Sbjct: 180 AEEEENALPPLPPKVIEVYSKVGVLLSKYRSGKIPKAFKIIPTLSNWEDILYLTRPDMWT 239
Query: 838 AAAMYQATRIFASNLKEKMAQKXYNLV 918
A Y+ATRIF SNLK AQ ++
Sbjct: 240 PHACYEATRIFISNLKPVQAQHFLTVI 266
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 637 TELQTQFSDAETLKLQNIDPRIKTMYEGVRDVLQKYRSGKLPKAFKMVPHLQ 792
T LQ Q E L + PR K + ++ +KYR K P A+ + P LQ
Sbjct: 148 THLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKNPDAWNLPPSLQ 199
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.40
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +1
Query: 505 PDTYYDNIEINEA-DEEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQFSDAETLKL 681
P T N+ + E +EE L L + T+ + +I+E++ +L Q+S T K+
Sbjct: 280 PSTKDTNMRLVEGHNEETLALQRGKYTQE--EVDKLIQERMEKVAEDLHAQYSAKHTQKI 337
Query: 682 QNIDPRIKTMYEGVRDVLQKYRSGKLPKAFKMVPHLQNWEQ 804
YE LQ + G P A K+ NWE+
Sbjct: 338 NAFKANYARKYEATIQELQN-QIGTAPNAPKI--SNSNWEE 375
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.6
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Frame = +1
Query: 184 HLVETN-MGKVKKLKPSQ-VGKNLALADQIESG-NSVKIKNRT-----KDRNRHDEDDEF 339
+L+E+N + V+++ P +G A ++ S N VKI T D DEDD+
Sbjct: 92 NLIESNSLDNVQEINPQNTIGDKSAHTEEESSNDNLVKITAGTIISDIMDEPVVDEDDKL 151
Query: 340 VKADLSKKILKTARR-------QQAELEDN-EIGPSP 426
+ DLSK+ L+T + Q E+ DN E P P
Sbjct: 152 SEEDLSKEDLETTLKGDENYSSSQKEIYDNDETIPKP 188
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 694 PRIKTMYEGVRDVLQKYRSGKLPKAFKMVPHLQNWEQILYLTEPT 828
P+IKT Y VR Y+ + K V ++NW ++ +P+
Sbjct: 44 PKIKTRYICVRQQDSLYKQADFQSSAKFVRLVRNWFDAGFVRDPS 88
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 27.1 bits (57), Expect = 3.7
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Frame = +1
Query: 523 NIEINEADEEALKLFKSSKTERVRTLADIIKEKITDKHTELQ-TQFSDAETLKLQN---I 690
++ + E+ +++ SK + L + E + +K T+++ + L Q+ I
Sbjct: 196 SLSVGAIGEKMKRMWGISKDDGALLLNERNVEILVNKLTQMRGAALKMGQMLSFQDSKLI 255
Query: 691 DPRIKTMYEGVRDVLQKYRSGKLPKAFKMVPHL-QNWEQILYLTEPTTWSAAAMYQATRI 867
DPR+ + E VRD +L + MV +L +NW + +AA++ Q R
Sbjct: 256 DPRVSQILERVRDGAHSMPEKQLEQV--MVKNLGKNWMTHYSEFDRKPMAAASIGQVHRA 313
Query: 868 -FASNLKEKMAQKXY 909
ASN E + + Y
Sbjct: 314 RLASNHMEVVVKVQY 328
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 196 FQLNGQ*GNF*QTPQFS*---YYIQKPFLRNINCKRYQRF 86
FQ Q NF T Q+S YY + +LR +NC R ++F
Sbjct: 44 FQNEAQLNNFFDTLQYSKDVSYYFR--YLRKLNCSRVRKF 81
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 160 FVKSFLTDHLVETNMGKVKKLKPSQVGKNLALADQIESGNSVKIKNRTK 306
F+ ++ DH N K K + V + L + +GN+ IKN K
Sbjct: 91 FLSEYIEDHHSSCNGIKPPKPQFEPVANSQVLNKDVNNGNNAPIKNGVK 139
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 325 EDDEFVKADLSKKILKTARRQQAELEDNEIGPSPAKHV 438
ED +K D+S ++ T +Q LE++ SPA ++
Sbjct: 338 EDASLLKTDISDELKNTFEKQIMNLEESVRAISPAANI 375
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 6.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 766 AFKMVPHLQNWEQILY 813
AF ++PHL WE+I++
Sbjct: 174 AFSLLPHLLKWEEIVW 189
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 145 KKTVVFVKSFLTDHLVETNMGKVKKLKPSQVGKNLALADQIESGNSVKI 291
K T + S + DHL+ ++++KPS++ +++ + + E G KI
Sbjct: 94 KSTTIPNSSVVLDHLLNEGENTLEEVKPSEIHPHMSWSSKSE-GKMFKI 141
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 208 KVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQ 387
K +K++ KNL LAD I + + + T R++ D K + +++ L+ + +
Sbjct: 518 KKEKMEREMKNKNLELADMILERDRARHELETMHRSQRD------KQESTERELRLLQEK 571
Query: 388 QAELEDNE 411
A LE N+
Sbjct: 572 AASLERNK 579
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 178 TDHLVETNMGKVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLS 357
TD T K++ + +Q + + ES NSV ++NR D + + ++
Sbjct: 629 TDKSDNTLPKKIRNAQLAQYNFIFVVGAEEESTNSVNVRNR-DDPKKQSKGSTVAVEEVV 687
Query: 358 KKILK 372
KK+LK
Sbjct: 688 KKLLK 692
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 8.6
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = +1
Query: 163 VKSFLTDHLVETNMGKVKKLKPSQVGKNLALAD--QIESGNSVKIKNRTKDRNRHDEDDE 336
VK ++ +V+ G+ +K K ++G ++ ++ Q++ I+N K N D+
Sbjct: 323 VKEGESNPVVKRKRGRPRKNK-LEIGNSVQTSEATQVKGAKKPAIRNAKKMSNEKDDSLN 381
Query: 337 FVKADLSKKILKTARR------QQAELEDNEIGPSPAKHVTL 444
S + +KT R +Q E ED +G +K +
Sbjct: 382 SQSDSASGEFIKTIARNNLQEIKQVEREDTLVGVRRSKRTRI 423
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = -2
Query: 818 VKYKICSQFCKCGTILKAFGNLPDLYFWSTSLTPSYMVFILGSIFC 681
V + + C FG D+Y +L +Y VF +G C
Sbjct: 126 VSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLC 171
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +1
Query: 208 KVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQ 387
K + LK S+ GK++ A + K KN+ K + + D K + + + +
Sbjct: 87 KEEDLKSSETGKDVETAAAAAAAAKKKKKNKKKVKAKKVGDSSVDKIATEESVKSMTKEE 146
Query: 388 QAEL 399
+A+L
Sbjct: 147 RAKL 150
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 520 DNIEINEADEEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQ 654
DNIE++++DEE K +++ + + ++++ D+ TEL +Q
Sbjct: 550 DNIELSDSDEEEEKATARKESDEKGSSS---QKELVDRMTELASQ 591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,161
Number of Sequences: 5004
Number of extensions: 54628
Number of successful extensions: 197
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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