Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C04
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    29   1.2  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   1.2  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    28   2.1  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +2

Query: 383 PQRGDICRISYELKI---KDSNNIVEKRDQIKIYLGDNEVLQGLDLALTLMYRGEECILQ 553
           P+ GD   + Y   +   K  ++ V++       +G  ++++G D  +  M  GE+  L 
Sbjct: 17  PKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLT 76

Query: 554 LAPRFAYGEMGLKPG 598
           + P + YG  G  PG
Sbjct: 77  ITPDYGYGPRGF-PG 90


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +2

Query: 311 QDVLGSGALLKKILKQGDEISGSRPQRGDICRISYELKIKDSNNIVEKRDQIKIYLGDNE 490
           +D+  S  + + +    DE+S   P   D+   S  L +K  +   +  D +++Y+G+  
Sbjct: 427 KDIRISSLITEGVNPTLDEVSKFNPNNEDLDLSSLALSVKGGHAEFQPGDHVEVYVGEQT 486

Query: 491 VLQGL 505
            + G+
Sbjct: 487 GVSGV 491


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 661 WSNNRSFILGFITLSD*SKALTWFKSH 581
           W++N ++ILGFIT  +   +L  F+ H
Sbjct: 251 WASNFAWILGFITNKEIENSLESFRKH 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,188
Number of Sequences: 5004
Number of extensions: 69270
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)