Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C04
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.93 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   2.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 567 NLGASCKIHSSP 532
           NLG++C+IH SP
Sbjct: 437 NLGSACRIHGSP 448



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 73  TYLLPXFYLCVNI*ILSCYFR 135
           T +L  F +CV + +L+ +FR
Sbjct: 310 TMILDTFSICVTVVVLNVHFR 330


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 65  LYLPTCYLXFICVLIY 112
           L LPT  + F+CVL++
Sbjct: 240 LILPTVLISFLCVLVF 255


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 728 SIAEKMEIGIRRRARGNWWYGRDEPQLAVQLYRRALDILDESEGGILI--HAVW 883
           S+A   +    RRA  N   GR+  + + +  +R    LD   GG+ +  HA W
Sbjct: 460 SLASLTDAENSRRAMENLGDGRNNKEDSEEFRQRLRKELDSKTGGVNLKGHAHW 513


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 627 SHCPTNPRLSPGLSPISP*ANLGASCKIHSSPL 529
           S   +   LSP  S ++  A  G SC IH  PL
Sbjct: 411 SRAASKEDLSP--SSLADGARFGGSCLIHGPPL 441


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 627 SHCPTNPRLSPGLSPISP*ANLGASCKIHSSPL 529
           S   +   LSP  S ++  A  G SC IH  PL
Sbjct: 411 SRAASKEDLSP--SSLADGARFGGSCLIHGPPL 441


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 115 ILSCYFRFLEIFKDE*RKQSFDGQV*KQLFRRLSGCGC*GDRGSETCRSCRSREGKIP 288
           I   Y   L  + D  R++   G V  +L   L+     G++ SE C S + +  K+P
Sbjct: 500 IQEIYLEALRAYVDN-RRRPNPGTVFARLLSVLTELRTLGNQNSEMCFSLKFKNKKLP 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,114
Number of Sequences: 438
Number of extensions: 4973
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)