Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C03
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   163   2e-41
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   163   2e-41
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   3.6  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  163 bits (397), Expect = 2e-41
 Identities = 76/158 (48%), Positives = 102/158 (64%)
 Frame = +1

Query: 217 VVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 396
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 397 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 576
           AAY+TG                              E +++GP  F+ +LDVGL RT+TG
Sbjct: 97  AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156

Query: 577 ARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAES 690
           +RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E+
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDET 194



 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = +3

Query: 108 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 215
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = +3

Query: 702 HIFGLHVAEYMRSLEQDDEDSFKRQFSKYXKLGVXADAIEAIYXKTHEXSCDHP 863
           +I+G HVAEYM  L  DDE+ +++QFS     G+ +D +E IY + +    + P
Sbjct: 198 YIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDP 251


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  163 bits (397), Expect = 2e-41
 Identities = 76/158 (48%), Positives = 102/158 (64%)
 Frame = +1

Query: 217 VVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 396
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 397 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 576
           AAY+TG                              E +++GP  F+ +LDVGL RT+TG
Sbjct: 97  AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156

Query: 577 ARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAES 690
           +RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E+
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDET 194



 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = +3

Query: 108 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 215
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = +3

Query: 702 HIFGLHVAEYMRSLEQDDEDSFKRQFSKYXKLGVXADAIEAIYXKTHEXSCDHP 863
           +I+G HVAEYM  L  DDE+ +++QFS     G+ +D +E IY + +    + P
Sbjct: 198 YIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDP 251


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 759 PHHPVQDFSCIQQHANQRCEPLCTFSI 679
           P H +Q FS    H+N R + +C F++
Sbjct: 114 PLHDLQTFSSNLNHSNNRRQTICNFNM 140


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 439 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 347
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,837
Number of Sequences: 5004
Number of extensions: 70320
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)