Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_C03
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 165 4e-41
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 165 4e-41
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 31 1.6
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 29 5.0
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 165 bits (401), Expect = 4e-41
Identities = 81/155 (52%), Positives = 101/155 (65%)
Frame = +1
Query: 223 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 402
QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40 QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96
Query: 403 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 582
Y TG +Y VEP D FR LDVGL RTTTG R
Sbjct: 97 YCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNR 155
Query: 583 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAE 687
VFGA+KGA+DGGL++PHS KRF G+ + K+ +++
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSD 190
Score = 57.6 bits (133), Expect = 1e-08
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDEDSFKRQFSKYXKLGVXADAIEAIYXKTH 842
+I+G HVA+YMRS+ +++ + F+ FS+Y K G+ AD +EA+Y K H
Sbjct: 195 YIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVH 241
Score = 54.8 bits (126), Expect = 9e-08
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +3
Query: 111 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 215
GFVK K Y KR+QVKFKRRR+GKTDY AR RL
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRL 37
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 165 bits (401), Expect = 4e-41
Identities = 81/155 (52%), Positives = 101/155 (65%)
Frame = +1
Query: 223 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 402
QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40 QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96
Query: 403 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 582
Y TG +Y VEP D FR LDVGL RTTTG R
Sbjct: 97 YCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNR 155
Query: 583 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAE 687
VFGA+KGA+DGGL++PHS KRF G+ + K+ +++
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSD 190
Score = 57.2 bits (132), Expect = 2e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +3
Query: 111 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 215
GFVK K YFKR+QVKFKRRR+GKTDY AR RL
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRL 37
Score = 56.4 bits (130), Expect = 3e-08
Identities = 21/47 (44%), Positives = 35/47 (74%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDEDSFKRQFSKYXKLGVXADAIEAIYXKTH 842
+I+G HVA+YMRS+ +++ + F+ FS+Y K G+ AD +E++Y K H
Sbjct: 195 YIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVH 241
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 99 FKNMGFVKV-VKNKQYFKRYQVKFKRRREGKTDYYA 203
F+N+GF +V +KNK Y KR V KR E K D+ A
Sbjct: 190 FENLGFTRVDIKNKLYSKRL-VGDKRYEEVKCDFRA 224
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 663 RIQKVQC*KYTGAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYXKLGVXADAIEAIYXKTH 842
R+ +VQ G H+F L E + LE+++ED KR K +L + H
Sbjct: 1281 RVVEVQASWAFGGHLFKLAAHEAQKKLEKEEEDE-KRMLQKSKELDAFDQQNHGAVPQYH 1339
Query: 843 EXS 851
+ S
Sbjct: 1340 DRS 1342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,182,957
Number of Sequences: 37544
Number of extensions: 448896
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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