Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C02
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   133   2e-31
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    59   6e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     57   2e-08
04_04_0303 + 24269467-24270741                                         31   1.0  
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    22   8.5  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  133 bits (321), Expect = 2e-31
 Identities = 58/78 (74%), Positives = 65/78 (83%)
 Frame = +1

Query: 103 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 282
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 283 QPTGGRARLTEGCSFRRK 336
           QPTGG+ARLTEGCSFRRK
Sbjct: 67  QPTGGKARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 58.8 bits (136), Expect = 6e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = +1

Query: 103 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 240
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +1

Query: 103 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 219
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +1

Query: 100 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 279
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 280 CQPTGGRA 303
           C  TG  A
Sbjct: 198 CSATGAGA 205


>07_03_1147 +
           24349811-24350161,24351031-24351366,24353260-24353376,
           24353585-24353647,24354066-24354139,24354216-24354306,
           24354791-24354850,24355270-24355462,24356242-24356522,
           24357435-24357536,24357664-24357774,24358410-24358475,
           24358562-24358660,24358757-24358788,24359171-24359274,
           24359380-24359507,24359625-24359756,24360051-24360359,
           24360887-24361071,24361161-24361263,24361407-24361552,
           24361748-24361827,24361901-24362103
          Length = 1121

 Score = 22.2 bits (45), Expect(3) = 8.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 808 RFXXXGXEXTXPPPPP 761
           RF     + T PPPPP
Sbjct: 44  RFAPPPPQPTLPPPPP 59



 Score = 21.4 bits (43), Expect(3) = 8.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 781 TXPPPPPXNP 752
           T PPPPP  P
Sbjct: 61  TLPPPPPPPP 70



 Score = 21.0 bits (42), Expect(3) = 8.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 775 PPPPPXNPXXXXK 737
           PPPPP  P    K
Sbjct: 66  PPPPPPQPPVGFK 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,854
Number of Sequences: 37544
Number of extensions: 321581
Number of successful extensions: 1138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)