Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C01
         (869 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.2  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/69 (23%), Positives = 25/69 (36%)
 Frame = +1

Query: 91  YGYRRTFLVTTTHPKWSLQKKKKSSEVVN*RNTXLKSGVTRNEMIAAITNRLHAEAMASL 270
           Y      + TT  P+W+      S++      T  K G    E   + T R    +    
Sbjct: 397 YSVPEPTISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEA 456

Query: 271 PP*CSSANP 297
           PP  + +NP
Sbjct: 457 PPAPAVSNP 465


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 399  EACKVFHICIRVHVLHCKTWPQCRQTP 319
            E+C  F++C+  H++     P     P
Sbjct: 1216 ESCSSFYVCVNGHLVPQNCAPGLHYNP 1242


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 228 GHHKSPSCRSDGIPTPVM 281
           G   +  C++DG P PV+
Sbjct: 713 GSDAAVECKADGFPRPVV 730


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,250
Number of Sequences: 336
Number of extensions: 3649
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)