Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C01
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    52   8e-08
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    44   4e-05
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.1  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   8.0  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   8.0  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 37/132 (28%), Positives = 56/132 (42%)
 Frame = +3

Query: 318 KEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEEL 497
           K + D+E++F  E+                 R+ +V G  EP ++E         ++ E 
Sbjct: 87  KRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEEI--------KKGEA 138

Query: 498 ARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKC 677
           A   +    T  E KK +         + KGIP+FW    +NV  LSEM+   DE  L  
Sbjct: 139 ADENEKKEPTSSESKKQEGG------DDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSH 192

Query: 678 LQDIKVQMHEDP 713
           L DI++   E P
Sbjct: 193 LVDIRISYMEKP 204



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 688 LKCKCMKTPISFTLEFYFAPNEYFTNTVL 774
           ++   M+ P  F LEF FA N +FTN +L
Sbjct: 196 IRISYMEKP-GFKLEFEFAENPFFTNKIL 223


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 576 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 692
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 721 FTLEFYFAPNEYFTNTVL 774
           + LEF F  N+YFTN +L
Sbjct: 210 YKLEFEFDSNDYFTNKIL 227


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 510 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 596
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 141 TPFRMCGRHQERSTVPI-FNISLSPPSKFSEKK 46
           TP+    RH+  ST PI  + S++P   F  KK
Sbjct: 251 TPYNRRLRHKRHSTTPISLSNSIAPSLSFQPKK 283


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -1

Query: 584 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 432
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,652
Number of Sequences: 5004
Number of extensions: 59672
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)