Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C01
         (869 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   8e-19
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               29   3.7  
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        29   4.9  
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      29   6.5  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   8.6  
SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)                      28   8.6  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 91.5 bits (217), Expect = 8e-19
 Identities = 55/134 (41%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
 Frame = +3

Query: 321 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW----RDDTEE 488
           E   +E KFY EVHA               R  I +G  EP D+EC  P      D+ EE
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEECRWPSDAEDEDEAEE 200

Query: 489 EELARAVQNAAIT-EGEEK---KDDKAIEPPMDP-NVKGIPDFWYNIFRNVSMLSEMMQE 653
           +E   A + + ++ E EEK    D++ IE    P + KGIP+FW    +NV +LSEM+QE
Sbjct: 201 KEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQE 260

Query: 654 HDEPILKCLQDIKV 695
           HDEPILK L D++V
Sbjct: 261 HDEPILKHLHDVRV 274



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +1

Query: 709 TPISFTLEFYFAPNEYFTNTVL 774
           TP+ F LEF+F PN +FTNTVL
Sbjct: 291 TPMGFVLEFHFTPNPFFTNTVL 312



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 776 TKEYLMKCXPDEXSPLXFEGLKFI 847
           TK Y MKC PDE  P  FEG + +
Sbjct: 313 TKSYKMKCEPDEDDPFSFEGPEIV 336


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 552 KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 662
           + I+PP+ P  K +PD   ++ R  + LS  + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192


>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 468 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKG-IPDFWYNIFRNVSMLSEM 644
           +R   ++EE   A QN+ I   + +  D  I      N+KG + D W  I +  S L  +
Sbjct: 215 YRRSAKKEEQKEAAQNSKILALQSQVSDLGIAMEAGLNIKGEVTDGWNEIKKAASGLRYI 274

Query: 645 MQEHDE 662
           + + DE
Sbjct: 275 IFKMDE 280


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 522 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 623
           +TE +E+K+DKA IE    P +    +  ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 432 TYEPNDDECLNPWRDDTEEEEL 497
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)
          Length = 238

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 468 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIP-DFWYNIFRNVSMLSEM 644
           W+     E   R ++NA +   +  K+ KA++P +D +    P    Y   + +   +EM
Sbjct: 38  WKLPIPAELTTRTIRNAQVWYQDTSKETKAVDPSLDSSSSSEPMQQLYLQQQQIKTAAEM 97

Query: 645 MQEH 656
            + H
Sbjct: 98  EKNH 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,801,522
Number of Sequences: 59808
Number of extensions: 461190
Number of successful extensions: 1153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)