Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_C01
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    28   10.0 

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 39/129 (30%), Positives = 54/129 (41%)
 Frame = +3

Query: 327 VDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARA 506
           + IE+ FY  VH                R  IV G  EP  ++   P  +  E ++LA  
Sbjct: 41  IQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGLEGDQLAEL 100

Query: 507 VQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQD 686
                          KA E   DP+ KGI DFW    R   +++E ++EHD PIL  L D
Sbjct: 101 Y--------------KAAEA--DPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTD 144

Query: 687 IKVQMHEDP 713
           +     +DP
Sbjct: 145 VTTAASKDP 153



 Score = 31.9 bits (69), Expect = 0.61
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 706 KTPISFTLEFYFAPNEYFTNTVL 774
           K P  F +EF+FA N YF N VL
Sbjct: 151 KDPAGFKIEFHFATNPYFKNQVL 173


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 462 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 575
           +P RD+  EE LA+ ++  A   GE+++ +   EP  D
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +3

Query: 483  EEEELARAVQNAAI---TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 653
            +EE+     QNA +   T  E++     +   +  N + +P     IF  V +  + +  
Sbjct: 1101 QEEQRVCYAQNAVVDMKTILEKEFRVNRVNTVLCLNDRPLPQL--TIFEQVRLEKDRLPA 1158

Query: 654  HDEPILKCLQDIKVQMHEDP 713
            +  P+L  L  ++V  H+DP
Sbjct: 1159 NSYPVLSKLSTVRVSQHDDP 1178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,870
Number of Sequences: 27780
Number of extensions: 345610
Number of successful extensions: 1041
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)