Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_B24
(931 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 42 7e-04
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 32 0.57
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 32 0.75
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 31 1.7
02_04_0109 + 19812544-19814474,19814574-19814607 30 2.3
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 29 4.0
01_06_1495 + 37769982-37771496 29 4.0
04_04_0704 + 27401683-27401818,27402761-27402937,27402983-274030... 29 7.0
02_03_0378 + 18327622-18329826 28 9.2
>03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 41.9 bits (94), Expect = 7e-04
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 632 KTQKEANQKKIFLCDICGKTAVSKASLLTHMCTHENVFPYKC--DVCPYKG*NRWTC*GY 805
K + A+Q+ I + CGK S L H C H + P+KC D CP W +
Sbjct: 808 KAELRAHQRNICTDESCGKRFSSHKYLKRHQCVHRDERPFKCPWDGCPMTFKWLWAQTEH 867
Query: 806 IKDLTYREKPFKC 844
I+ T E+P+KC
Sbjct: 868 IRVHT-GERPYKC 879
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 32.3 bits (70), Expect = 0.57
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = +2
Query: 455 PQKEIDYSYKVPSPDFSD-DNSESLNCSICNKQFCDATSYETHLMKCSLEESS--SIPKP 625
P I +S D +D D+ S C CN F ++Y HL+ S I K
Sbjct: 294 PVASITFSSHSRDQDETDADDINSYECQQCNLTFHGQSAYAHHLITFHKMGSKRRKINKV 353
Query: 626 PKKTQKEANQKKIFLCDICGKTAVSKASLLTHMCTH 733
K + + F C +C KT ++ H+ +H
Sbjct: 354 GKFGEPVIGKDGKFECPVCNKTFEEQSRYFGHVGSH 389
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 31.9 bits (69), Expect = 0.75
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = +2
Query: 473 YSYKVPSPDFSDDNSESLNCSICNKQFCDATSYETHLM---KCSLEESSSIPKPPKKTQK 643
YS+ + D+ S C CN F ++Y HL+ K S + S K K +
Sbjct: 295 YSHSRDQDETVADDINSYECQQCNLTFHGQSAYAHHLITFHKVSSKRRKS-NKVSKFGEP 353
Query: 644 EANQKKIFLCDICGKTAVSKASLLTHMCTH 733
+ F C +C KT ++ H+ +H
Sbjct: 354 VIGKDGKFECPVCNKTFEEQSRYFGHIGSH 383
>01_05_0309 -
20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -3
Query: 599 LSYISSDESRMMLHHKIAYYILNSLNSRSYHLKSLVMVLYKSNRFLFEACHCLRFCCSPH 420
L ++S + R +L A Y+LN L+ S+ S VL+ N C+ SPH
Sbjct: 556 LDWLSLGDGRFLL----AVYLLNELHIYSHKHPSFKNVLHTVNSKEKHLWSCIALSHSPH 611
Query: 419 HIL-F*WKPPVT 387
I F W P T
Sbjct: 612 DIASFLWGPKAT 623
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = +2
Query: 545 KQFCDATSYETHLMKCSLEE------SSSIPKPPKKTQKEANQKK 661
KQF D TS+ L S E+ S SIP+ PK+++K + K+
Sbjct: 337 KQFSDRTSHAHRLSNVSREDKRHTRCSESIPQTPKESRKRSRSKR 381
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 503 SDDNSESLNC-SICNKQFCDATSYETHLMKCSLEESSS 613
++D+++S C S C+K D++++ T +KCS E SS
Sbjct: 770 AEDSNDSFGCSSCCSKNVADSSNH-TERVKCSSEACSS 806
>01_06_1495 + 37769982-37771496
Length = 504
Score = 29.5 bits (63), Expect = 4.0
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Frame = +2
Query: 377 NNEMLLEVSIKTECDVDYNRNEDSDKPQ--KEIDYSYKVPSPDFSD-DNSESLNC-SICN 544
+N + + + T C++ + N+++ P K DY + S + + ++ E +NC + C
Sbjct: 158 SNTLCAPMILGTNCNLRPSANDEATIPDISKTHDYEELMNSLNTTQAESDEMMNCQNPCG 217
Query: 545 KQFCDATSYETHLMKCSLEESSSIPKPP------KKTQKEANQKKIFLCDICGKTAVSKA 706
+ + E H +K S + PP + ++E C ICGK A
Sbjct: 218 GEGSEPIPMEDHDVKESDDGGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDA 277
Query: 707 SLLTHMCTH 733
+L HM H
Sbjct: 278 NLRMHMRGH 286
>04_04_0704 +
27401683-27401818,27402761-27402937,27402983-27403048,
27403139-27403219,27404089-27404207
Length = 192
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 485 VPS-PDFSDDNSESLNCSICNKQFCDATSYETHLMKCSLEESSSI 616
VP+ P FSDD+ +S +CSI D + HL+ + E SI
Sbjct: 146 VPTHPAFSDDDMDSRSCSISGDS--DVDELDQHLLSATTIELHSI 188
>02_03_0378 + 18327622-18329826
Length = 734
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 419 DVDYNRNEDSDKPQKEIDYSYKVPSPDFSDDNSESLNCSICNKQ 550
DV+ ++++ QK + S VP PDF D + + + N Q
Sbjct: 472 DVENPATDENNLEQKRVPVSIDVPDPDFYDFDKDRTERTFDNDQ 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,759,004
Number of Sequences: 37544
Number of extensions: 394299
Number of successful extensions: 1096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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