Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B21
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    73   5e-14
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    30   0.50 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    28   2.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.6  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   4.7  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 30/168 (17%)
 Frame = +3

Query: 231 KMRIRAFPMTMDEKYVERI--WSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGER 404
           K++IRA P       V+    W +L+ AI +I +K+ S LSFEELYRNAY +VLHK+GE+
Sbjct: 6   KLKIRA-PRKFSANQVDFATHWEVLQRAIGDIFQKSTSQLSFEELYRNAYILVLHKYGEK 64

Query: 405 LYTGLKEVVTQHLETKVREDVLHS-----LHNGFLQTLNN-----AWT------------ 518
           LY  +++V+   L+ +    +  +     L N  L    N     +W+            
Sbjct: 65  LYNHVQDVIRSRLKEETVPAIYKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSS 124

Query: 519 ------DHQTSMVMIRDILMYMDRVFVQQNEVDNVYNLGLIIFRDQVV 644
                 DH  SM MI  +L Y+D+V+ +  +   V   G+ IFR+ V+
Sbjct: 125 LVNSWKDHIVSMQMISSVLKYLDKVYSKSADKVPVNENGIYIFREVVL 172


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 671 KMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVE 501
           +  S +  +  L SEDN+P I ++V  I   +N V     I++ DH    +S CI++
Sbjct: 26  RFFSVSYASRKLASEDNKPSIQEVVRGI--PQNRVRNWAVIAHIDHGKSTLSDCILK 80


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -2

Query: 674 TKMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVESL 495
           T   S     N +   DN+P +   V F  + K + H++Q  S   H+ L+  P ++   
Sbjct: 635 TVFASETENENTVFIRDNKPTMYTPVYFAEVGKVNCHVYQLSSLPVHS-LITGPAVIVDT 693

Query: 494 *ETIV 480
            +T++
Sbjct: 694 TQTLL 698


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 238 LILPGILSFGKVLFIIGALIY 176
           +I P IL FG + FIIG L+Y
Sbjct: 650 IISPLILVFGLIYFIIGFLVY 670


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +1

Query: 613 LGSLSSEIKLFVMDAFEIIFVRHC*ELVARERRGEVVDRLAIPKRLSDAHGSRVSTSRAV 792
           LGS +      V++AF     R     V   R G+VV+  A P R ++    +  TSR++
Sbjct: 271 LGSGTGSTVFQVLNAFSKAVGRDLPYKVTPRRAGDVVNLTANPTRANEE--LKWKTSRSI 328

Query: 793 YE 798
           YE
Sbjct: 329 YE 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,794
Number of Sequences: 5004
Number of extensions: 75542
Number of successful extensions: 232
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)