Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_B21
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 193 2e-49
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 193 2e-49
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 31 1.4
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 31 1.4
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 31 1.4
AF067945-15|AAC17678.2| 286|Caenorhabditis elegans Serpentine r... 29 5.8
AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 29 5.8
Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z68317-4|CAA92688.1| 486|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical p... 28 7.7
Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical pr... 28 7.7
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n... 28 7.7
AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding... 28 7.7
AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding... 28 7.7
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 193 bits (470), Expect = 2e-49
Identities = 94/154 (61%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +3
Query: 231 KMRIRAFPMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 410
KMRIR F T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY
Sbjct: 12 KMRIRPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLY 71
Query: 411 TGLKEVVTQHLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-Q 584
GLK+V+ H+ VR ++ S+++G FL+T+ +W DH +MVMIRDILMYMDR++V Q
Sbjct: 72 NGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQ 130
Query: 585 QNEVDNVYNLGLIIFRDQVVRYGCIRDHLRQTLL 686
N V VYNLGL +R +++R I D +R LL
Sbjct: 131 NNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALL 164
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 688 ELVARERRGEVVDRLAIPKRLSDAHGSRVSTSRAVYEEDFEKPFLHQSSEF 840
EL+ +R+ ++ I K D S SR VYE++FE+P L ++S++
Sbjct: 165 ELIKLDRKSNQINWHGI-KNACDMLISLGIDSRTVYEDEFERPLLKETSDY 214
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 193 bits (470), Expect = 2e-49
Identities = 94/154 (61%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +3
Query: 231 KMRIRAFPMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 410
KMRIR F T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY
Sbjct: 12 KMRIRPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLY 71
Query: 411 TGLKEVVTQHLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-Q 584
GLK+V+ H+ VR ++ S+++G FL+T+ +W DH +MVMIRDILMYMDR++V Q
Sbjct: 72 NGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQ 130
Query: 585 QNEVDNVYNLGLIIFRDQVVRYGCIRDHLRQTLL 686
N V VYNLGL +R +++R I D +R LL
Sbjct: 131 NNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALL 164
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 688 ELVARERRGEVVDRLAIPKRLSDAHGSRVSTSRAVYEEDFEKPFLHQSSEF 840
EL+ +R+ ++ I K D S SR VYE++FE+P L ++S++
Sbjct: 165 ELIKLDRKSNQINWHGI-KNACDMLISLGIDSRTVYEDEFERPLLKETSDY 214
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
T06D8.1b protein.
Length = 3653
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 772 PENHEHLTGVSESPDDPQLRLDVHEQQAPSSV 677
P+ HE LTG+ E+ + L D H + P++V
Sbjct: 3265 PDTHEFLTGIDETMFNKSLVPDTHREDLPNNV 3296
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 772 PENHEHLTGVSESPDDPQLRLDVHEQQAPSSV 677
P+ HE LTG+ E+ + L D H + P++V
Sbjct: 3265 PDTHEFLTGIDETMFNKSLVPDTHREDLPNNV 3296
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 772 PENHEHLTGVSESPDDPQLRLDVHEQQAPSSV 677
P+ HE LTG+ E+ + L D H + P++V
Sbjct: 3265 PDTHEFLTGIDETMFNKSLVPDTHREDLPNNV 3296
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 772 PENHEHLTGVSESPDDPQLRLDVHEQQAPSSV 677
P+ HE LTG+ E+ + L D H + P++V
Sbjct: 3265 PDTHEFLTGIDETMFNKSLVPDTHREDLPNNV 3296
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 772 PENHEHLTGVSESPDDPQLRLDVHEQQAPSSV 677
P+ HE LTG+ E+ + L D H + P++V
Sbjct: 3265 PDTHEFLTGIDETMFNKSLVPDTHREDLPNNV 3296
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 772 PENHEHLTGVSESPDDPQLRLDVHEQQAPSSV 677
P+ HE LTG+ E+ + L D H + P++V
Sbjct: 3265 PDTHEFLTGIDETMFNKSLVPDTHREDLPNNV 3296
>AF067945-15|AAC17678.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein16 protein.
Length = 286
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 286 IRSTYF--SSIVIGKALILILPGILSFGKVLFIIGALIYFLH 167
I+ T+F ++I G+ I+ +LS ++FI+G L F+H
Sbjct: 220 IKQTFFQGTTIFTGQVTYYIIAPLLSNSIIIFIVGTLWAFMH 261
>AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical
protein F17A9.2 protein.
Length = 533
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 354 ELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKV 455
E +++A+T++ +K G+ L T + TQHL+ ++
Sbjct: 380 EKFKSAFTLMANKQGKALVTFERNFRTQHLQVQM 413
>Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical
protein F31E9.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 332 VFLLYFLYGIL*QAPYTLHILLIHSHRKSSDPHFARYFVF 213
+FL LYG+ Y L ++I HRK+ D F + +VF
Sbjct: 7 LFLASTLYGLPSLILYILTFVVILRHRKTFDSSFFQLYVF 46
>Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical
protein C15C6.1 protein.
Length = 194
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 301 FNKLHIRSTYFSSIVIGKALILILPGIL--SFGKVLFII 191
F KLHI T + +G ILI+ G L F K +F++
Sbjct: 26 FGKLHIHHTMNVIVAVGVLAILIIMGALYMKFRKAMFVM 64
>Z68317-4|CAA92688.1| 486|Caenorhabditis elegans Hypothetical
protein T01H3.4 protein.
Length = 486
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 731 WRFRNACQMLMVLGYQPPELFMKKTLKNXSCISH 832
W F NA + L++LGY+P F K+ + N C+ H
Sbjct: 425 WTFFNATKSLLMLGYKPNFEF-KECVNN--CVKH 455
>Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical
protein R74.3b protein.
Length = 287
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 641 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 504
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical
protein R74.3a protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 641 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 504
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
nucleotide transhydrogenaseprotein 1 protein.
Length = 1041
Score = 28.3 bits (60), Expect = 7.7
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +3
Query: 114 IVKNKYTVL*YKNKLFCWCKKYIKAPMMKSTLPKDKIPGKMRIRAFPMTMDEKYVERIWS 293
I+++K T L Y +LF +K I+ +K +PK+ PG+ R+ P +
Sbjct: 3 ILRSKITRL-YWFRLFSNGQKKIEYSKLKVAVPKEIFPGEKRVSLSP--------NGVAL 53
Query: 294 LLKNAIQEIQKKNN---SGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKV 455
L KN I + ++N +G S EE R+ + KH E T + V E +V
Sbjct: 54 LKKNGISVLIEENAGVLAGYSNEEYVRSGAD--VGKHNEVFNTDIMLKVRPPTENEV 108
>AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding
protein processedisoform protein.
Length = 285
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 641 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 504
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding
protein unprocessedisoform protein.
Length = 287
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 641 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 504
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,244,852
Number of Sequences: 27780
Number of extensions: 417335
Number of successful extensions: 1404
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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