Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B19
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    29   0.64 
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    29   1.1  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    28   2.0  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    26   6.0  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   6.0  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   7.9  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   7.9  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 542 NVADAAVHKEATPFKQEDIKENSTKTDLVNANQDRLQSNKFVLTPDYIQQTIK 700
           +VAD+ V  E T  K  +   + TK DL++ ++ R  +     TPD  +Q  K
Sbjct: 194 SVADSRVTAEETSTKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIKEQHAK 246


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 654 VTNSSSHLTTFNKLLKAH*NKKILIPKSKKNFFN 755
           VTN  S L TF+K L      K+++ KS   +FN
Sbjct: 5   VTNPKSSLATFSKQLNGLLQAKVVVCKSVNPYFN 38


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 587 QEDIKENSTKTDLVNANQDRLQSNKFVLTPDYIQQTIKSALKQENLNPEIEE 742
           +EDI+    + DL + N+D   S +  L   +I+   ++A+  + L    EE
Sbjct: 5   KEDIRNGQEEDDLFSENEDNHTSQQDELINGHIENDSETAVSDDGLFSNTEE 56


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 613 SAILFNIFLFKWSRFFVNGSIGY-IVFAIQKRLS 515
           SA LFN FL +WS+   + S  Y I+  + ++LS
Sbjct: 320 SATLFNTFLLEWSQEVTSNSTLYDIIHKVFEKLS 353


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 351 C*XEGELLGIQIIAVKTLQNDARSATRLHDLSSDSFYNSPGWLTNQ*SFFN 199
           C  E   LG    A   LQND  +   +++LS++S++ S   +     F+N
Sbjct: 118 CDVEVVYLGGSFNAFPPLQNDRITVVYMNELSNESYHRSAQLMELDEMFYN 168


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 590 EDIKEN-STKTDLVNANQDRLQSNKFVLTPDYIQQTIKSALKQENLN-PEIEEKLLQLQR 763
           E++  N S K   V  ++   +S + VLTP+   + +   L++EN +  E++  L  +  
Sbjct: 694 ENVSSNFSKKNRNVVVSESLTKSMEEVLTPEKFYERLSKLLEEENSDLGELKNHLDSIIA 753

Query: 764 YQERRMKPEV 793
           +  +R+ P +
Sbjct: 754 FGPKRVGPNI 763


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 210 TIGWSATRDCYKNCHCSSHADE 275
           T  W +    Y  CHCS H +E
Sbjct: 29  TNAWCSLPSIYILCHCSKHQEE 50


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 609 ALKLT*LMLTKIVCKVTNSSSHLTTFNKLLKAH 707
           AL+   LM  ++ CK +N  S +T++NK+   H
Sbjct: 168 ALREVYLMPFQLACKYSNFKSLMTSYNKVNGEH 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,166
Number of Sequences: 5004
Number of extensions: 39588
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)