Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B19
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-17|AAG00013.1|  179|Caenorhabditis elegans Hypothetical...    30   1.8  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U13876-5|AAA21176.2|  449|Caenorhabditis elegans Mammalian bysti...    28   7.4  

>AF000263-17|AAG00013.1|  179|Caenorhabditis elegans Hypothetical
           protein T08B2.3 protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 588 RKILKRIALKLT*L--MLTKIVCKVTNSSSHLTTFNKLLK 701
           ++IL+R  +KLT    +L K++C++   SSH +  N+ +K
Sbjct: 124 KRILQRCDVKLTSYKNILLKLLCRLLTGSSHFSNLNQFVK 163


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/97 (18%), Positives = 44/97 (45%)
 Frame = +2

Query: 494 QENNDPKRQALLNGEDNVADAAVHKEATPFKQEDIKENSTKTDLVNANQDRLQSNKFVLT 673
           ++  +PK++     E    +    K+  P K+E+ KE   K ++    ++  +  +    
Sbjct: 288 KKEEEPKKEEEKKEEVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKKEEEEKKDEEPKKE 347

Query: 674 PDYIQQTIKSALKQENLNPEIEEKLLQLQRYQERRMK 784
            +  ++  K   + E  + ++EEK L+ ++ +E   K
Sbjct: 348 EEKKEEEEKKEDEVEEKSEKVEEKELEPKKDEEETKK 384


>U13876-5|AAA21176.2|  449|Caenorhabditis elegans Mammalian bystin
           (adhesion protein)related protein 1 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
 Frame = +2

Query: 497 ENNDPKRQALLNG-EDNVADAAVHKEA--TPFKQEDIKENSTKTDLVNANQDRLQSNKFV 667
           +++D   +   NG ED V +     EA    F ++D  + ST  D++ A  +  Q++  +
Sbjct: 105 DDDDDNEEEDDNGFEDQVVELDPRDEADLARFLKKDAIQMSTLYDIIQAKIEAKQNDAEL 164

Query: 668 LTPDYIQQTIKSALKQENLNPEIEEKLLQLQRYQERRMKPEVP 796
                + Q   +     +++PE+ E   Q+ +Y  +    +VP
Sbjct: 165 A----LSQVDPNEFNMRDMDPEVVEMYEQIGQYMSKYRSGKVP 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,030
Number of Sequences: 27780
Number of extensions: 224002
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)