Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B17
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    35   0.019
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
 Frame = +2

Query: 575  PPXXRPXXXXPPPX-----PPXPXXXXXXXPXXXPXXXPXXXXXXXXXXPTPXXXXXPPX 739
            PP  +P    PP       PP P       P   P   P          P P     PP 
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161

Query: 740  PXPXXXXPPXXXP 778
            P P    PP   P
Sbjct: 1162 PKPSVAAPPVPAP 1174



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 20/74 (27%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
 Frame = +2

Query: 575  PPXXRPXXXXPPPX------PPXPXXXXXXXPXXXPXXXPXXXXXXXXXXPTPXXXXXPP 736
            PP  +P    PP        PP P       P   P   P          P P     PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218

Query: 737  XPXPXXXXPPXXXP 778
             P P    PP   P
Sbjct: 1219 VPTPSAGLPPVPVP 1232



 Score = 29.5 bits (63), Expect = 0.72
 Identities = 29/149 (19%), Positives = 31/149 (20%)
 Frame = +1

Query: 493  PXKXXXGXPXXPXPXXXXXXQXXXKXXPPXXPAXPGXPPXRPPXTXXXXXXXPRXXAXXP 672
            P     G P  P P             PP        PP   P         P+     P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS---GAPPVPKPSVAAP 1169

Query: 673  PXXXXXXXXXPXHPXXXXXXXPXXXPXXXPXXXXPXXXXXXXPXXXXXXPXPXRXXXXPX 852
            P         P  P       P   P   P    P       P      P P      P 
Sbjct: 1170 PVPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 853  XXXXXPXXPPXPXXGAXXXXXXXPRXPXP 939
                    PP P   +       PR   P
Sbjct: 1229 VPVPTAKAPPVPAPSSEAPSVSTPRSSVP 1257



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 27/134 (20%), Positives = 28/134 (20%), Gaps = 4/134 (2%)
 Frame = +3

Query: 492  PXXXKXGXPXXXPPXXXXXXXXTXKXXPPPXXGXPXXPPXPXPPXXXXXXXXPPXXXPXX 671
            P     G P    P              PP       PP P P         PP   P  
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP-----SVAAPPVPVPSG 1138

Query: 672  XPXXPXXXXXPXPPXXXXXXXPXXXPXXXSXXXXXXXXXXXPXXXP----XXPPXPXXXX 839
             P  P       P        P   P   +           P   P       P P    
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198

Query: 840  PXPXXXXXXPXXPP 881
            P P      P  PP
Sbjct: 1199 PVPKPSVGVPPVPP 1212


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 25/119 (21%), Positives = 26/119 (21%), Gaps = 1/119 (0%)
 Frame = +3

Query: 528 PPXXXXXXXXTXKXXPPPXXGXPXXPPXPXPPXXXXXXXXPPXXXPXXXPXXPXXXXXPX 707
           PP        +    PPP          P PP        P    P            P 
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP-PLGNASRTSTPPVPT 419

Query: 708 PPXXXXXXXPXXXPXXX-SXXXXXXXXXXXPXXXPXXPPXPXXXXPXPXXXXXXPXXPP 881
           PP       P   P    S           P   P  PP P      P      P  PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 573 PPPXXGXPXXPPXPXPP 623
           PPP    P  PP P PP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.156    0.577 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,387
Number of Sequences: 5004
Number of extensions: 11286
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)