Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B16
         (923 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    50   6e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    49   1e-04
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    43   0.010
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    41   0.051
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    37   0.63 

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 23/30 (76%), Positives = 23/30 (76%)
 Frame = -1

Query: 632 YPLXXWITVLPPLSELIPLAAAGRPXAASQ 543
           YPL  WITVLPPLSEL PLAA  RP  ASQ
Sbjct: 32  YPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 471 CINESXXARGKAVXXLGALPFPRPLTRCXRSSGCGXRYQL-TQGR*YGYPXXQGIXQ 638
           CI +   AR +AV  L ALP  R  TRC RS GCG      + GR YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 43.2 bits (97), Expect = 0.010
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +2

Query: 566 RLRXAVSAHSRAVIRLSTXSGDXPGK 643
           RLR AVSAHS+AVIRLST SGD  GK
Sbjct: 32  RLRRAVSAHSKAVIRLSTESGDNAGK 57


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 40.7 bits (91), Expect = 0.051
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +3

Query: 495 RGKAVXXLGALPFPRPLTRCXRSSGCGXRYQLTQG 599
           R   +   G +P PR LTR  RS GCG RY+LT G
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDG 60


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 37.1 bits (82), Expect = 0.63
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +1

Query: 478 MNRPXPGERRXAYWAXFRF 534
           MNRP  GERR AYWA FRF
Sbjct: 28  MNRPTRGERRFAYWALFRF 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,197,117
Number of Sequences: 1657284
Number of extensions: 5910269
Number of successful extensions: 8058
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8024
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)