Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_B15
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 89 8e-19
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 44 2e-05
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 43 7e-05
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 37 0.004
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 34 0.031
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 33 0.053
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 29 0.87
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 1.1
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 2.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 3.5
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 3.5
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 4.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 4.6
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 26 6.1
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 26 6.1
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 6.1
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 6.1
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 26 6.1
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 26 6.1
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 8.1
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.1
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 89.0 bits (211), Expect = 8e-19
Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +2
Query: 197 TMFSCITCKVLFNTSELQREHYKLDWHRYNLKRKVASIEPVTLXXXXXXXXXXXXSQNEK 376
T F+C TC V FN +E Q+ H+K DWH YNLKRKVAS+ P++ E
Sbjct: 3 TSFACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQNEEV 62
Query: 377 QDDSQY---CQCCSKLFSTKNSYNNHLNSKKHKVSVEKYTESQK 499
Q +++ C+ C+K F ++ +Y++H+ SKKH+ ++ K+ + +
Sbjct: 63 QKKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSKFQRNSR 106
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 757 KHMSEAHSFFIPDVXFCINIRGLLLYLGEKXSQGYMCLWC 876
KHM +HS +IP+ + ++ L YL EK S G+ CL C
Sbjct: 225 KHMKASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTC 264
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 44.4 bits (100), Expect = 2e-05
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 206 SCITCKV-LFNTSELQREHYKLDWHRYNLKRKVASIEPVT 322
SC+ C++ +T + ++ H K DWHR+N KRK+ + PV+
Sbjct: 53 SCVNCQIDNLHTLDERKSHIKSDWHRFNTKRKITKLPPVS 92
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 42.7 bits (96), Expect = 7e-05
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 395 CQCCSKLFSTKNSYNNHLNSKKHKVSVEKYTESQKDQENSGQSDTDSFVKVECTTGLTNE 574
C C+K F ++N NH NSKKHK ++ K + K Q + +S + E +
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAESNKQPEDAPSESPY 331
Query: 575 RSKFVVVN-TTDSGEDIETDSEIEELDSDEW 664
+K + T S E+IE E+ +E+
Sbjct: 332 SNKVSSSDFYTRSFEEIEKTFTFVEISDNEF 362
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +2
Query: 407 SKLFSTKNSYNNHLNSKKHKVSVEKYTESQKDQENSGQSDTDSFVKVECTTGLTNERSKF 586
SKL S NSY + +N K+H S + E + +S + T+S + G++ F
Sbjct: 592 SKLASLLNSYQSFINKKEHLYSFLQLVEPSFAKSDSSNA-TESQISESVRKGISIFNLLF 650
Query: 587 VVVNTTDSGEDIETDSEIEELD 652
+V S I +++E+LD
Sbjct: 651 IVYKNVCSQAGINPSTKLEDLD 672
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 395 CQCCSKLFSTKNSYNNHLNSKKHKVSV--EKYTESQKDQENSGQ 520
C+ C + +NSY H KKH+ ++ + E++K QEN+ Q
Sbjct: 56 CRLCLTTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQ 99
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 33.1 bits (72), Expect = 0.053
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 413 LFSTKNSYNNHLNSKKHKVSVEKYTESQ-KDQENSGQSDTDSFVKVECTTGLTNERSKFV 589
L S KN LNS ++ SVE+ ++++ K+Q NS +S + + T T+ S
Sbjct: 30 LNSFKNDPKKELNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGK-TASNTSPLSPKK 88
Query: 590 VVNTTDSGEDIETDSEIEELDS 655
V N + DI D IEEL S
Sbjct: 89 VENLSKLFNDINEDVSIEELKS 110
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 392 YCQCCSKLFSTKNSYNNHLNSKKHKVSVEKYTES 493
YC+ C K F + H SK H +V++ S
Sbjct: 244 YCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSS 277
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 371 EKQDDSQYCQCCSKLFSTKNSYNNHLNSKKHKVSVEKYTESQ 496
++ D Q+C CC F+ SY ++K+ V + Y +++
Sbjct: 229 DQSDSPQHCYCCGNKFN--ESYYQSQTAQKYNVCISCYQQNR 268
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 389 QYCQCCSKLFSTKNSYNNHLNSKKHKVSVEKYTESQKDQENSGQS 523
++ + S L K+ N +NS+K+ SVE S + Q+ S S
Sbjct: 115 KHSEWASLLAKQKHQINPLMNSEKNSTSVEDLPGSNRTQQTSSHS 159
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 410 KLFSTKNSYNNHLNSK-KHKVSVEKYTESQKDQENSGQSDTDSF 538
K S K + + H N + KH +V+ ++SQK G+S F
Sbjct: 389 KAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGF 432
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 3.5
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Frame = +2
Query: 383 DSQYCQCCSKLFSTKNSYNNHLNSKKHKVSVEKYTESQKDQENSGQSDTDSFVKVECTTG 562
+S C CC K H+N+K+H + D ++S + T
Sbjct: 144 ESFRCLCCHVPCKNKKLLREHMNNKRH---------FRLDPKSSEYDEFYIINYASVTKS 194
Query: 563 LTNERSKFVVVNTTDSGEDI-ETDSEIEELDSDEWDECRIQESDSLIKPRDCLFCVHHSK 739
+T S+F + EDI ETD I +++ ++ + + E + +FC H K
Sbjct: 195 ITISHSQFAI------NEDINETDDTISDINDEDAEPLSV-ECIFCTNFYEPVFCFEHCK 247
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +2
Query: 449 NSKKHKVSVEKYTESQKDQENSGQSDTDSFVKVECTTGLTNERSKFVVVNTTDSGEDIET 628
+S + S E+ + S + E+S + +VE S+ ++ S E+ ET
Sbjct: 35 DSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEET 94
Query: 629 DSEIEELDSDEWDECRIQESDS 694
+SE + SDE + ES+S
Sbjct: 95 ESEEDSEVSDESESESESESES 116
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 4.6
Identities = 25/117 (21%), Positives = 44/117 (37%)
Frame = +2
Query: 362 SQNEKQDDSQYCQCCSKLFSTKNSYNNHLNSKKHKVSVEKYTESQKDQENSGQSDTDSFV 541
S +E + S+ S S+++ ++ N S + +ES + +S S +DS
Sbjct: 205 SDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSS-DSESESSSEDSDSSSSSSDS-- 261
Query: 542 KVECTTGLTNERSKFVVVNTTDSGEDIETDSEIEELDSDEWDECRIQESDSLIKPRD 712
E + + S ++ D +DSE E D +SDS D
Sbjct: 262 --ESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSED 316
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 629 DSEIEELDSDEWDE 670
++E EE+DSDEWD+
Sbjct: 47 ETEDEEVDSDEWDK 60
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 563 LTNERSKFVVVNTTDSGEDIETDSEIEELDSDE 661
LTNERS ++ T G+ + EEL S++
Sbjct: 131 LTNERSNILIYMTGHGGDGFIKFQDAEELSSED 163
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 599 TTDSGEDIETDSEIEELDSDEWDECRIQESDSLIK--PRDCLFCVHHSKNMVK 751
T+ E+ E + IEEL+SDE ++ E + L K P+D + HSK+ +K
Sbjct: 159 TSSEEEEEENGARIEELNSDE-EDAEQAEEEILEKPVPKDEV-AEKHSKDKLK 209
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 455 KKHKVSVEKYTESQKDQENSGQSDTDSFVK 544
KKH+ V+K E +K+++ +DT + +K
Sbjct: 142 KKHREEVQKAIEDRKEEDEKSITDTTTGMK 171
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 410 KLFSTKNSYNNHLNSKKHKVSVEKYTESQKDQENSGQSDTDSFVKVECTTGL--TNERSK 583
+L S +SY + S+ H V T+ +D SG+S + C + L ++ SK
Sbjct: 22 QLLSEDDSYASEKLSEDHVTEVHFVTDKDEDSNASGESRGSMELLENCFSLLHAQDDTSK 81
Query: 584 FV 589
FV
Sbjct: 82 FV 83
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 267 NL*CSRCNSDVLNNTLQVMHE 205
NL CS+CN+ ++T +MHE
Sbjct: 174 NLICSKCNTTFNHSTALMMHE 194
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 452 SKKHKVSVEKYTESQKDQENSGQSDTDSFVKVE-CTTGLTNERSKFVVVNTTDSGEDIET 628
+K H S EK + + + ++ + S + + + E + V TT G+++
Sbjct: 332 NKDHATSSEKLSLGNESIHSINETRSSSIEEPDNADNKIVEEEPMLLPVPTTAQGQNVLE 391
Query: 629 DSEIEELDSDEWDECRIQESD 691
+ + LDS E E IQE +
Sbjct: 392 AVQYDGLDSLEDMEALIQEME 412
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Frame = +2
Query: 425 KNSYNNHLNSKKHKVSVEKY----TESQKDQE---NSGQSDTD 532
KN+ NN N H ++ E T+ QK QE +S SDTD
Sbjct: 38 KNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTD 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,621
Number of Sequences: 5004
Number of extensions: 60432
Number of successful extensions: 207
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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