Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B14
         (884 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    31   0.062
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    28   0.33 
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   4.1  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 30.7 bits (66), Expect = 0.062
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 105 KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK- 281
           + E+ A+ +D+   +R  +   EH+IRN E   +K  S  D  +A  E    + VA+ + 
Sbjct: 324 QEEQLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEA 383

Query: 282 YDEVAQTLE 308
           Y  V +TL+
Sbjct: 384 YGTVRRTLQ 392


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
            anion exchanger protein.
          Length = 1102

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = +3

Query: 522  TEDDLKILDDLYPEVTPK------HELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGT 683
            T+ +LKILDD+ PE+T +      H+L E+G+ G + ++          I  KPK+   T
Sbjct: 1029 TKRELKILDDIMPEMTKRARADDLHQL-EDGEVGIYRRLVGCC------IGAKPKQQPVT 1081

Query: 684  T 686
            T
Sbjct: 1082 T 1082


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = +3

Query: 219 YRDLQKAGKELNSDQKVAVA------KYDEVAQTLEFARD 320
           +  L  AG+EL+S  KVA+        YD +  TLE   D
Sbjct: 125 FSSLMNAGQELDSSLKVAMVLKSMPESYDHLTTTLETRSD 164


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,764
Number of Sequences: 2352
Number of extensions: 12856
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)