Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B13
         (844 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   5.0  
CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    24   6.7  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 300 LPFFQQEGSYLQGRHHCHY*NYR 232
           L F++ EGS L  RH+C    YR
Sbjct: 92  LQFYRMEGSDLTLRHYCSETKYR 114


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 300 LPFFQQEGSYLQGRHHCHY*NYR 232
           L F++ EGS L  RH+C    YR
Sbjct: 92  LQFYRMEGSDLTLRHYCSEAIYR 114


>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 315 TNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYEKNGELLPGK 443
           ++ K+PT  +   +LLK        YVD    + + GEL P +
Sbjct: 272 SSKKDPTSGVLPSQLLKSVPLSSNDYVDNFNIFTEFGELTPAQ 314


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,198
Number of Sequences: 2352
Number of extensions: 8582
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)