Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B12
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    27   2.8  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   4.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   8.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   8.5  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   8.5  

>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 132 DILNKNENTLILEKLKKWLKADLSNRRNQILR 37
           DIL K E+ L+ +K+++ L +  +  RNQ+L+
Sbjct: 74  DILKKAESDLVNDKIRESLDSAYTAARNQLLK 105


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +1

Query: 163 GSFNLK----VR*SLKRRQVHLQCYINYRTNHI 249
           GSF LK    V   + +RQVH    INYRT+ +
Sbjct: 140 GSFKLKETPNVHEWIDQRQVHFTSMINYRTSQL 172


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 368  GGLHSGHVAHDQHDTQVCL 424
            GGL+S H+  DQ+ + +CL
Sbjct: 1440 GGLNSSHLVSDQNASVICL 1458


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 443 LNEQDDVLSLNIRNGKNEI 499
           LNEQD   S N+RNG N++
Sbjct: 166 LNEQDGKKSDNLRNGVNKV 184


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 504 CNISFFPFLMFNDKTSSCSFRISQSGGRQTWVSCWS 397
           C+I + PF   +D+  +  F IS +   +T  S W+
Sbjct: 198 CDIPYDPFRKLSDENKAYGFVISMTDYYETLPSLWN 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,344
Number of Sequences: 5004
Number of extensions: 62963
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)