Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B12
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   6.1  

>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -1

Query: 132  DILNKNENTLILEKLKKWLKADLSNRRNQILR 37
            D  NKNEN +  E++KK L+ ++SNR + I++
Sbjct: 1608 DAWNKNENEI--EEVKKALEIEISNRNDTIVK 1637


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 790  AWRCGPPARARPHACC*RQR-TPPPVAGSRDPTEG 689
            +WR GPP R  P     R R  PPP  G   P  G
Sbjct: 1446 SWRGGPPMRGMPPLGMMRGRGGPPPPRGMNSPMRG 1480


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 218  CKCTCRRFKDYRTLRLKLPIHYLLQVNQK 132
            C C C+R K  + L+ +L  H LL  N +
Sbjct: 5046 CDCRCQRSKQTKHLKARLRRHMLLSANMR 5074


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,416
Number of Sequences: 27780
Number of extensions: 378996
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)