Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_B11
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.93
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 3.7
04_03_0489 + 16503325-16503747,16503916-16503978 29 4.9
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 4.9
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 6.5
12_02_1275 - 27482784-27483272 28 8.6
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 28 8.6
06_03_0685 - 23499779-23500204 28 8.6
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 8.6
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.93
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 212 WKWCGLRRDQTGREG 256
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 186 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 350
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 289 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 396
PAA+A L RLRTP+ + C G P V H A
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 307 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 215
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 418 ARSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAE---RLLPGALRDAPSPE 260
+RSPLR RE+G +R P+PRHS S +E R + RL G RD P+
Sbjct: 481 SRSPLRY---RERGG---YRRPSPRHSRSRSPAEHQRRDVRNRLRSG--RDGGGPD 528
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 209 QWKWCGLRRDQTGREG 256
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 409 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERL 296
P + S +GH +HHR + A E DR + L
Sbjct: 44 PFCMLTSSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 229 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 354
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 546 LGHHGDXRRCWPKSWSLTIAGHLASRD 466
L D + WP W ++ AGH+++ D
Sbjct: 76 LQRRADCKDTWPGQWDISSAGHISAGD 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,391
Number of Sequences: 37544
Number of extensions: 347313
Number of successful extensions: 1167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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