Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B10
         (960 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    54   4e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    52   3e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    51   4e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    51   5e-05
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    47   6e-04
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.50 

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 54.4 bits (125), Expect = 4e-06
 Identities = 30/48 (62%), Positives = 31/48 (64%)
 Frame = -1

Query: 621 RGXEPMEKRQQRGLFXVXGLXTGLWLTCSFLRYPLIXWITVLPPLSEL 478
           RG EPMEKR +  L  V        LTCSF  YPLI WITVLPPLSEL
Sbjct: 4   RGAEPMEKRLRCWLLPVLCFL----LTCSFRLYPLILWITVLPPLSEL 47


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 364 CINESANARGEXVCVLGALPLPRSLTRCARXFGCGERYQL-TQRR*YGYPXNQGITQ 531
           CI + A AR E V VL ALPL RS TRC R  GCG      +  R YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 51.2 bits (117), Expect = 4e-05
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +2

Query: 362 SALMNRPTRGERXFAYWALFRFXGH 436
           +ALMNRPTRGER FAYWALFRF  H
Sbjct: 25  AALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +1

Query: 388 RGEXVCVLGALPLPRSLTRCARXFGCGERYQLT 486
           R   +C  G +PLPRSLTR AR FGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 25/42 (59%), Positives = 26/42 (61%)
 Frame = +3

Query: 417 SSASXVTDXXXXXXXXXXXXXXHSKAVIRLSTXSGDNAGKNM 542
           SSAS +TD              HSKAVIRLST SGDNAGKNM
Sbjct: 18  SSASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.5 bits (83), Expect = 0.50
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -2

Query: 416 APNTQTXSPRALADSLMQ 363
           APNTQT SPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,028,464
Number of Sequences: 1657284
Number of extensions: 9136030
Number of successful extensions: 14962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14933
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88998789286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)