Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B10
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   9.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +1

Query: 616 PPGRASQXSTLKSXVPETRPDYKRYXAXSPLGNPPRXASXVPSXPPLTXNTXSXP 780
           PP   S   T  S +P T        +  P GN     +  P+ PP + ++ S P
Sbjct: 318 PPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT--PTVPPTSTSSTSTP 370


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 803 GGPLSQXXPXLXLXKXPGVXXFPXPXXGXGXPXTPPFSXPNPXXPFFP 946
           G P  Q      L   PG    P    G G P  P  + P P  P  P
Sbjct: 470 GIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMP 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,119
Number of Sequences: 5004
Number of extensions: 31764
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)