Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B10
         (960 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    30   2.8  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    30   2.8  

>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
 Frame = -1

Query: 948 PGKXGXXGFGXENG--GVXGXPXPXXGXGKXXTPGXLXNXKXGXXCERGPP 802
           PG  G  G G E G  G  G P P    G+   PG   +      C+  PP
Sbjct: 270 PGPRGKDGAGGEKGAPGDQGNPGPYGKPGQPGAPGPDGSAGEKGGCDHCPP 320


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
 Frame = -1

Query: 948 PGKXGXXGFGXENG--GVXGXPX---PXXGXGKXXTPGXLXNXKXGXXCERGPP 802
           PGK G  G    NG  GV G P    P    G+  TPG   +      CE  PP
Sbjct: 225 PGKAGSPGQDGSNGDAGVAGEPGQRGPPGPPGQAGTPGSPGDAGSPGSCEHCPP 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,883
Number of Sequences: 27780
Number of extensions: 218178
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)