Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B09
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 785 GXXPXPPPXXPGXXVFXGGXGKGAQKXNPLSRGVGG 678
           G  P  PP  PG     GG G+G  +  P  RG  G
Sbjct: 149 GPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPG 184


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 785 GXXPXPPPXXPGXXVFXGGXGKGAQKXNPLSRGVGG 678
           G  P  PP  PG     GG G+G  +  P  RG  G
Sbjct: 149 GPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPG 184


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 95  DRMSQIAEEQKLEESD-GLPPASSSSIAAQEKPREELP 205
           +R   + E +  EE D G+ PA    +  QEKPR++ P
Sbjct: 224 EREDTVDESKGEEEEDQGVRPAQKRQVKQQEKPRKQKP 261


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 95  DRMSQIAEEQKLEESD-GLPPASSSSIAAQEKPREELP 205
           +R   + E +  EE D G+ PA    +  QEKPR++ P
Sbjct: 224 EREDTVDESKGEEEEDQGVRPAQKRQVKQQEKPRKQKP 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,440,004
Number of Sequences: 27780
Number of extensions: 148115
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)