Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B08
         (892 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    57   7e-07
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    53   1e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.021
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    40   0.064
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.085
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet...    34   4.2  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.6  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 56.8 bits (131), Expect = 7e-07
 Identities = 30/54 (55%), Positives = 31/54 (57%)
 Frame = +1

Query: 517 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRRR*YGYPQKSG 678
           CI + A AR EAV VL ALPL RS TRC RS GCG         R YG PQ  G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +1

Query: 541 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 639
           R   +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 319 DPDMIRYIDEFGQTTTRMQ 375
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.9 bits (94), Expect = 0.021
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +2

Query: 443 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 565
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 40.3 bits (90), Expect = 0.064
 Identities = 20/25 (80%), Positives = 20/25 (80%)
 Frame = -2

Query: 678 P*FLWITVLPPPLSELIPLAAAERP 604
           P  LWITVLPP LSEL PLAA ERP
Sbjct: 33  PLILWITVLPP-LSELTPLAAVERP 56


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.085
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 587 ERGSGRAPNTQTASPRALADSLMQ 516
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
           arietinum|Rep: Reverse transcriptase - Cicer arietinum
           (Chickpea) (Garbanzo)
          Length = 37

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 653 NTVIHRNQGITQEXTC 700
           NTVIH NQGITQE TC
Sbjct: 21  NTVIHXNQGITQERTC 36


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 477 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 313
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,380,128
Number of Sequences: 1657284
Number of extensions: 11906793
Number of successful extensions: 25324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25320
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)