Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_B07
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 55 1e-08
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 55 1e-08
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 50 4e-07
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 48 2e-06
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 44 3e-05
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 40 3e-04
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 36 0.006
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 1.1
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 28 2.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 2.6
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 3.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 4.5
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 7.9
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 26 7.9
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 55.2 bits (127), Expect = 1e-08
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Frame = +3
Query: 264 RDNIIMGHSWCQKNYARVLRATGLRPDLQLLPEGDATRLGSHGYSLIRRSTHSREHCSSI 443
R+NI+ G + + Y + + A L+ D ++ EGD T +G G SL SR +
Sbjct: 659 RENILFGSEFDPELYEKTIHACCLKRDFEIFTEGDQTEVGQKGASL-SGGQKSRISLARA 717
Query: 444 ILQGHNCWL*NEPLAALDAALARHVVARGLVP-AVRAGRTIVLATNRLELLHYADLIIAM 620
I + +L ++ L+++D ++R ++ P +VL TN L +L AD I +
Sbjct: 718 IYSQADIYLLDDVLSSVDQHVSRDLIKNLFGPEGFLRTHCVVLTTNSLNVLKEADSIYIL 777
Query: 621 DNGRV 635
NG++
Sbjct: 778 SNGKI 782
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Frame = +3
Query: 264 RDNIIMGHSWCQKNYARVLRATGLRPDLQLLPEGDATRLGSHGYSLIRRSTHSREHC-SS 440
R+N+ H K VL L+ + L +G +R+ G + S + C +
Sbjct: 1318 RENLDPNHRLTDKKIWEVLEIASLKNCISQLEDGLYSRVAEGGANF--SSGQRQLICLAR 1375
Query: 441 IILQGHNCWL*NEPLAALDAALARHVVARGLVPAVRAGRTIVLATNRLELLHYADLIIAM 620
++L L +E A++ A + + + RTI+ +R+ + +D I+ +
Sbjct: 1376 VLLTSTRILLLDEATASVHAET--DAIVQQTIRKRFKDRTILTVAHRINTVMDSDRILVL 1433
Query: 621 DNGRV 635
D+G+V
Sbjct: 1434 DHGKV 1438
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 55.2 bits (127), Expect = 1e-08
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
Frame = +3
Query: 264 RDNIIMGHSWCQKNYARVLRATGLRPDLQLLPEGDATRLGSHGYSLIRRSTHSREHCSSI 443
++NI+ G + Y + +RA L D ++L +GD T +G G SL +R +
Sbjct: 661 QENILFGLELDPEFYEKTIRACCLLRDFEILADGDQTEVGEKGISL-SGGQKARISLARA 719
Query: 444 ILQGHNCWL*NEPLAALDAALARHVVARGL-VPAVRAGRTIVLATNRLELLHYADLIIAM 620
+ + +L ++ L+A+D + R +V L + R ++L+TN L +L A +I +
Sbjct: 720 VYSRSDIYLLDDILSAVDQHVNRDLVRNLLGSKGLLRSRCVILSTNSLTVLKEASMIYML 779
Query: 621 DNGRVSGYGRVSSASNDSYLSRWVQLASE 707
NG++ G + S+ S S+ QL SE
Sbjct: 780 RNGKIIESGSFTQLSS-SPDSQLFQLLSE 807
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 50.0 bits (114), Expect = 4e-07
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Frame = +3
Query: 264 RDNIIMGHSWCQKNYARVLRATGLRPDLQLLPEGDATRLGSHGYSLIRRSTHSREHCSSI 443
RDNI+ + + ++ Y +V++A GL DLQ D T +G G +L R +
Sbjct: 695 RDNILFDYPYIEERYKKVIQACGLLTDLQSFVASDLTEIGEKGVTL-SGGQKQRIALARA 753
Query: 444 ILQGHNCWL*NEPLAALDAALARHVVARGLVPAVRAGRTIVLATNRLEL-LHYADLIIAM 620
+ + L ++ +ALD + + ++ RT++L T+ + L + A I+ +
Sbjct: 754 VYSPTSIVLMDDVFSALDIHTSNWIYKHCFQSSLMENRTVILVTHNVHLFMDSAAFIVTV 813
Query: 621 DNGRVSGYGRVSSASNDSYLSRWVQLASE 707
NG S + +S +L+ ASE
Sbjct: 814 KNG--SAFPVTDKSSPLLFLAEQAASASE 840
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 158 ALIGEMYLERGDVLYNRNSSKWYAGQPPWLLEAS 259
AL+GE+ L +G R+ Y Q PWL A+
Sbjct: 660 ALLGELSLNKGSYNLPRSKGVSYVSQVPWLRNAT 693
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 82 DLEIPTGKLIMVVGGTSAGKSSFLS 156
++ P KL +V+G T +GKSS +S
Sbjct: 635 NIVFPRNKLSIVIGPTGSGKSSLIS 659
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 264 RDNIIMGHSWCQKNYARVLRATGLRPDLQLLPEGDATRLGSHGYSLIRRSTHSREHCSSI 443
R NI+ G + ++ Y ++++A L DL + +GD T + S+G SL R +
Sbjct: 662 RSNILFGEPYDEERYFQIIKACCLDSDLNSMNDGDLTYIHSNGSSL-SGGQKQRVSLARA 720
Query: 444 ILQGHNCWL*NEPLAALDAALARHVVARGLVPAVRAGRTIVLATNRLEL-LHYADLIIAM 620
+ ++ ++ +ALD + +R + + + +TI+L T+ + L L A+ +I +
Sbjct: 721 LYSNAEVYIFDDIFSALDVSTSRKIYESCFLSTLLQHKTIILFTHNVSLCLPIAENVIVL 780
Query: 621 DN 626
N
Sbjct: 781 KN 782
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 44.0 bits (99), Expect = 3e-05
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Frame = +3
Query: 321 RATGLRPDLQLLPEGDATRLGSHGYSLIRRSTHSREHCSSIILQGHNCWL*NEPLAALDA 500
+A + + P+G +R+G G L R + IL+ + L +E +ALD
Sbjct: 695 KAAQIHDRILQFPDGYNSRVGERGLKL-SGGEKQRVAVARAILKDPSIILLDEATSALDT 753
Query: 501 ALARHVVARGLVPAVRAGRTIVLATNRLELLHYADLIIAMDNGRVSGYG---RVSSASND 671
R + A + + +GRT ++ +RL + ADLI+ + NGR+ G +
Sbjct: 754 NTERQIQAA--LNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELIKRDGG 811
Query: 672 SYLSRWVQLA 701
+Y W Q A
Sbjct: 812 AYKKMWFQQA 821
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Frame = +3
Query: 345 LQLLPEGDATRLGSHGYSLIRRSTHSREHCSSIILQGHNCWL*NEPLAALDAALARHVVA 524
++ PEG T++G G +I R S ++L+ +E +ALD R ++
Sbjct: 562 IESFPEGYQTKVGERGL-MISGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALL- 619
Query: 525 RGLVPAVRAG-RTIVLATNRLELLHYADLIIAMDNGRV--SGYGRVSSASNDSYLSRW 689
R + ++ +T V +RL + D+I ++ GRV G A N Y S W
Sbjct: 620 RNINDLIKGSHKTSVFIAHRLRTIKDCDIIFVLEKGRVVEQGSHEQLMAKNSVYTSMW 677
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 36.3 bits (80), Expect = 0.006
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Frame = +3
Query: 264 RDNIIMGHSW--CQKNYARVLRATGLRPDLQLLPEGDATRLGSHGYSLIRRSTHSREHCS 437
R+NI++G S ++ + + + LP G T G G SL R +
Sbjct: 1212 RENIVLGASKDVSEEEMIEACKKANIHEFILGLPNGYNTLCGQKGSSL-SGGQKQRIAIA 1270
Query: 438 SIILQGHNCWL*NEPLAALDAALARHVVARGLVPAVRAGRTIVLATNRLELLHYADLIIA 617
+++ L +E +ALD+ + V + + A GRT V +RL + AD I
Sbjct: 1271 RALIRNPKILLLDEATSALDSHSEK--VVQEALNAASQGRTTVAIAHRLSSIQDADCIFV 1328
Query: 618 MDNGRVSGYG 647
D G ++ G
Sbjct: 1329 FDGGVIAEAG 1338
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 91 IPTGKLIMVVGGTSAGKSSFLS 156
IP G+L+ ++G + +GKS+F+S
Sbjct: 459 IPFGELVHIIGPSGSGKSTFIS 480
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/54 (25%), Positives = 33/54 (61%)
Frame = +3
Query: 474 NEPLAALDAALARHVVARGLVPAVRAGRTIVLATNRLELLHYADLIIAMDNGRV 635
+EP +ALD + +++V + A R G+T ++ T+ + ++ +L++ +D G +
Sbjct: 595 DEPTSALDP-ITKNLVMDA-IRAHRKGKTTLVITHDMSQINNDELVLVIDKGHL 646
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 161 KQDKNDDFPALVPPTTIISFPVGISRSPTSNRSSF 57
K+ + D+ P LVP + IS I RS T RSSF
Sbjct: 117 KELRRDELP-LVPESFTISSSYPIQRSSTQTRSSF 150
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 510 RHVVARGLVPAVRAGRTIVLATNRLELLHYADLIIAMDNGRVSGYG 647
R+V RGL P + ++L TNR + + II M+ GYG
Sbjct: 296 RNVYIRGLPPNT-SDENLLLYTNRFGKVSSSKAIIDMETNLCKGYG 340
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 85 LEIPTGKLIMVVGGTSAGKSSFLSCFNWRNVS 180
L++P G ++VG AGKS+ L + ++++
Sbjct: 25 LDLPKGSRTLLVGANGAGKSTLLKLLSGKSLA 56
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 209 FDYITHLLFQDTFLQLKQDKNDDFPALV 126
FD+ +H F D ++ +D DFP V
Sbjct: 997 FDFFSHRKFNDLSSEISEDTPTDFPDFV 1024
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 400 LSGGQRIRVSIARALYSK 453
+SGG R+RV+++RAL+ K
Sbjct: 221 MSGGWRMRVALSRALFIK 238
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 400 LSGGQRIRVSIARAL 444
LSGGQ+ R++IARAL
Sbjct: 620 LSGGQKQRIAIARAL 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,024
Number of Sequences: 5004
Number of extensions: 56477
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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