Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B05
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736           31   1.2  
01_06_0826 - 32252546-32253208                                         30   2.1  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   2.8  
03_02_0885 - 12169913-12170497,12170593-12170943                       29   3.7  
06_01_0438 + 3110703-3111945,3112486-3113057                           29   6.5  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    28   8.6  
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690           28   8.6  

>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
          Length = 443

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 734 LQREL*ESATLPEGERRTGIP*AAGSE-QESARGSFQGETPG 612
           L R+L  +    EGER   +P  AGS+ Q +ARG   G  PG
Sbjct: 46  LPRKLAGTRESEEGEREEALPSRAGSDGQSTARGELSGLGPG 87


>01_06_0826 - 32252546-32253208
          Length = 220

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 580 EVAKPDRTIKIPGVSPWKLPRALSCSDPAAYGIPVRLSPSGSVALSHSS 726
           EV+KP R +   G     LP  L+C    A  +    SP+G  A S SS
Sbjct: 5   EVSKPSRRLSPKGSFKLSLPSLLACGQCKATAVSPPESPTGVGARSFSS 53


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 516 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 662
           CWR  +        T  D Q    +    +KD    P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331


>03_02_0885 - 12169913-12170497,12170593-12170943
          Length = 311

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 734 LQREL*ESATLPEGERRTGIP*AAGSE-QESARGSFQGETPG 612
           L R+L  +    EGER   +P  AGS+ + +ARG   G  PG
Sbjct: 46  LPRKLAGTRESEEGEREEALPSRAGSDGRSTARGELSGLGPG 87


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 152 HCILVVVCPNSSMYLIMSGSN*PSTKGRSAAAVP 51
           HC + +VC +S+  L++S    P+    ++AA+P
Sbjct: 64  HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 348 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 503
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 628 WKLPRALSCSDPAAYGIPVRLSPSG 702
           W   RA SCSDPAA G+    S +G
Sbjct: 2   WLATRASSCSDPAAAGLVPPKSAAG 26


>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
          Length = 411

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 631 KLPRALSCSDPAAYGIPVRLSPSGSVA 711
           +LPR  + + PAA+G+P RL  + ++A
Sbjct: 358 ELPRVAAAASPAAHGLPRRLELTAALA 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,313,976
Number of Sequences: 37544
Number of extensions: 550268
Number of successful extensions: 1576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)