Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B01
         (1089 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   6.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
 Frame = +3

Query: 387  AXPVPXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQK--------AXQ 542
            A PVP  +  P   +          P +  PP  +      P  P S+            
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208

Query: 543  PGPEPGTSPPAXAXRXGTPGXP 608
            P P P T+PP      G P  P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVP 1230


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/76 (23%), Positives = 24/76 (31%)
 Frame = +3

Query: 348  SANARGXADRX*GAXPVPXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXS 527
            S +A   A +  G         TP  R     P     P    PP       + P  P  
Sbjct: 1667 SKDAAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726

Query: 528  QKAXQPGPEPGTSPPA 575
              +  P P P +S P+
Sbjct: 1727 PPSAPPPPLPASSAPS 1742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,869
Number of Sequences: 5004
Number of extensions: 21528
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 573748416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)