Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_B01
(1089 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 33 0.40
11_06_0610 - 25449085-25453284 32 0.69
02_01_0302 - 2021221-2023305 32 0.69
12_01_0442 + 3495333-3496484 32 0.92
02_05_0686 - 30900748-30902167,30903442-30904742 31 2.1
09_02_0543 + 10427321-10428315,10428440-10429154 30 2.8
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 30 2.8
01_05_0490 + 22672241-22674679 30 2.8
12_01_0419 - 3316866-3318172,3318249-3318360 30 3.7
07_01_0479 + 3606663-3607448 29 6.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.5
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 29 8.5
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 8.5
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 8.5
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 33.1 bits (72), Expect = 0.40
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +3
Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGTPG 602
P G+ P PPS HP P A +P P +P A PG
Sbjct: 216 PKGAPPPPPPPPPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPPVPG 268
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 32.3 bits (70), Expect = 0.69
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +3
Query: 444 PAGSDXP----KAAKPPSXRTXXXTHPKEPXSQKAXQPGPEP-GTSPPAXAXRXGTPGXP 608
PAG P KA+ PP+ + PK + P PE +SPP A TP P
Sbjct: 582 PAGESPPTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPP 641
Score = 31.9 bits (69), Expect = 0.92
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +3
Query: 393 PVPXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPP 572
P P + V PA S P K P T + P P + P P P +SPP
Sbjct: 919 PTPKSSPPSHEEYVPPSPAKSTPPPEEKSPPSHTPESSSP--PSEESEPPPSPTPKSSPP 976
Query: 573 A 575
+
Sbjct: 977 S 977
Score = 29.5 bits (63), Expect = 4.9
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Frame = +3
Query: 399 PXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQP--GPEPGTSPP 572
P + P P S P+ PP+ T + P P P GP G SPP
Sbjct: 530 PPQAEPPTEYSPPATPESSPPPEGKSPPTP-TASHSPPPVPEGHTPSPPKSGPPAGESPP 588
Query: 573 AXAXRXGTPGXP 608
+ P P
Sbjct: 589 TPESKASPPPTP 600
>02_01_0302 - 2021221-2023305
Length = 694
Score = 32.3 bits (70), Expect = 0.69
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 444 PAGSDXPKAAKPPSXRTXXXTH-PKEPXSQKAXQPGPEPGTSPPAXAXRXGTPGXP 608
P GS P PPS T H P + + + P T+PP+ + TP P
Sbjct: 486 PPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHP 541
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +3
Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGTPG 602
P GS+ P PPS T +H S P P P+ PG
Sbjct: 436 PPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPG 488
>12_01_0442 + 3495333-3496484
Length = 383
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -3
Query: 457 SDPAGRXRTCRAXGVSVRXGTGXAPYXRSASPRAXADXXXXV*PPTPPPWT*XH 296
S P GR C A GV +R G P R +P A PP P WT H
Sbjct: 133 SGPMGRSTLCNACGVRLR-AVGSLPEHR--APAARTTTAAPASPPDSPIWTPGH 183
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 2.1
Identities = 22/74 (29%), Positives = 25/74 (33%)
Frame = +3
Query: 387 AXPVPXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTS 566
A P P P + P PKAA PP P P ++ P P G S
Sbjct: 309 ASPAPP--PPPPPKPAAAAPPPPPPPKAAPPPPPPKGP---PPPPPAKGPPPPPPPKGPS 363
Query: 567 PPAXAXRXGTPGXP 608
PP G G P
Sbjct: 364 PPPPPPPGGKKGGP 377
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/63 (25%), Positives = 20/63 (31%)
Frame = +1
Query: 811 AXAQAPARXDXXPXRKAGXXPAPXQAPRXENPXXPXXGXNXXPRXXXXGXXXPPRNTXXX 990
A +PA P + A P P P+ P P G P PP+
Sbjct: 306 AAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
Query: 991 PXP 999
P P
Sbjct: 366 PPP 368
Score = 29.5 bits (63), Expect = 4.9
Identities = 19/72 (26%), Positives = 25/72 (34%)
Frame = +3
Query: 393 PVPXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPP 572
P+P ++P +R A P PP + P P + A P P G PP
Sbjct: 289 PLPPGRESP-SRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPP 347
Query: 573 AXAXRXGTPGXP 608
A P P
Sbjct: 348 PPAKGPPPPPPP 359
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 30.3 bits (65), Expect = 2.8
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = +3
Query: 384 GAXPVPXLTDTPXARQVRXRPAGSDXP---KAAKPPSXRTXXXTHPKEPXSQKAXQPGPE 554
G P P D+P + P + P ++ PP P P Q + P P
Sbjct: 2 GTEPDPIQQDSPAPPRPTPAPQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPA 61
Query: 555 PGTSPP 572
P +PP
Sbjct: 62 PDMTPP 67
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/52 (25%), Positives = 18/52 (34%)
Frame = +3
Query: 417 PXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPP 572
P + + P P PP + P P QK+ + P P PP
Sbjct: 71 PLQKAPKVSPPPPQKPDKVSPPPAQKPSKVSPPPPPPQKSAKVSPPPAAKPP 122
>01_05_0490 + 22672241-22674679
Length = 812
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 462 PKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPP 572
P+ PP T P +P S+ A P P P PP
Sbjct: 639 PQPPPPPPPTTRRSRKPPQPPSRPAPPPPPPPQQQPP 675
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEP--GTSPPA 575
PA D P+ KPP+ P + A +P PEP PPA
Sbjct: 305 PATVDEPEQPKPPAAVEPPVQEPPAEETPTATEPEPEPPAAEEPPA 350
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 6.5
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Frame = +3
Query: 393 PVPXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPG---T 563
P+P L+ P A RP P +PP P P + P P PG
Sbjct: 152 PMPNLSAPPVAYPQVVRPPPGQMPPPMRPPQMPIPFQRPPGVPPAFPGGPP-PPPGPFMR 210
Query: 564 SPPAXA---XRXGTPGXP 608
PP R G PG P
Sbjct: 211 GPPPMGPPQVRPGMPGGP 228
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 6.5
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = +3
Query: 447 AGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQ--PGPEPGTSPPAXAXRXGTPGXP 608
A + P A P + P P + A PGP PG PP A G G P
Sbjct: 330 APAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPP 385
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 28.7 bits (61), Expect = 8.5
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 462 PKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPP 572
P PPS T P +P QP P P PP
Sbjct: 53 PPELMPPSPPKASPTPPPQPQPHPQLQPPPPPAPLPP 89
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.7 bits (61), Expect = 8.5
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = +3
Query: 408 TDTPXARQVRXRPAGSDXPKAAK---PPSXRTXXXTHPKEP--XSQKAXQPGPEPGTSP 569
+D P +R RP GS P+ + R+ PK P S +A PG T P
Sbjct: 542 SDEPASRASSPRPTGSSSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKP 600
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 28.7 bits (61), Expect = 8.5
Identities = 15/58 (25%), Positives = 21/58 (36%)
Frame = +3
Query: 399 PXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPP 572
P T +P R R G P + PP H + + +P P+P PP
Sbjct: 9 PPPTPSPPPFSSRPRVVGPPPPPPSDPPPPPPPHHHHHHRRRHRHSKKPKPQPQPQPP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.129 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,786
Number of Sequences: 37544
Number of extensions: 248977
Number of successful extensions: 702
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3257937684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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