Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_B01
         (1089 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125443-2|AAD12800.1|  243|Caenorhabditis elegans Hypothetical ...    33   0.27 
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protei...    30   2.5  
AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular col...    30   2.5  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    30   3.3  
Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical pr...    30   3.3  
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    29   4.4  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    29   4.4  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    29   4.4  

>AF125443-2|AAD12800.1|  243|Caenorhabditis elegans Hypothetical
           protein H32C10.2 protein.
          Length = 243

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 468 AAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSP 569
           A+KPPS R+   T+P    +QK  QP P P  SP
Sbjct: 30  ASKPPSRRSSSNTNPDSLVNQKHAQPLPSPLHSP 63


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
 Frame = +3

Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGP-----EPGTSPPAXAXRXGTPGXP 608
           PAG+D       P       T+P+      A  PGP       G SP A     G PG P
Sbjct: 198 PAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPP 257


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
 Frame = +3

Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGP-----EPGTSPPAXAXRXGTPGXP 608
           PAG+D       P       T+P+      A  PGP       G SP A     G PG P
Sbjct: 197 PAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPP 256


>Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical
           protein M18.1 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 19/68 (27%), Positives = 23/68 (33%)
 Frame = +3

Query: 399 PXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAX 578
           P     P  R V  RP  +  P    PP           +    +  QPGP+     P  
Sbjct: 197 PGAPGAPGTRSV-GRPGTAGSPGPQGPPGQNGNDGQPGNDGAPGQPGQPGPDGHPGQPGN 255

Query: 579 AXRXGTPG 602
           A   GTPG
Sbjct: 256 AGPPGTPG 263


>U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protein
           34 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = +3

Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAX-QPGPEPGTSPPAXAXRXGTPGXP 608
           P G   P     P   +     P  P    A  +PGP+    PP      GTPG P
Sbjct: 149 PQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEP 204


>AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular
           collagen RAM-4 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = +3

Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAX-QPGPEPGTSPPAXAXRXGTPGXP 608
           P G   P     P   +     P  P    A  +PGP+    PP      GTPG P
Sbjct: 149 PQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEP 204


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
 Frame = +3

Query: 387 AXPVPXLTDTPXARQVRXRPAGSDXPKAAKP------PSXRTXXXTHPKEPXSQKAXQPG 548
           A P P    TP  +Q   +PA    P  A P      P        +P +P  Q+A  P 
Sbjct: 294 APPKPVPQQTPPVQQAPPKPAVQQAPTRAAPAPPKPAPQQAPPVQQNPPKPAVQQAQAPV 353

Query: 549 PEPGTSPP 572
            +   +PP
Sbjct: 354 VQQAPAPP 361



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
 Frame = +3

Query: 393 PVPXLTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAX----QPGPEPG 560
           P+P +   P ++Q    P     P+ A P        T    P +QKA     Q    P 
Sbjct: 382 PMPAVQQAPSSQQATQAPP-KPAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQQQASAPP 440

Query: 561 TSPPAXAXRXGTP 599
           TSP A      TP
Sbjct: 441 TSPSAPVQAPNTP 453


>Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC373.7 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = +3

Query: 444 PAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGTPGXP 608
           PAGS  P   K P  R         P +    QPG +     P  A   G PG P
Sbjct: 156 PAGSAGPAGPKGPDGRPGQPGSAGHPGAP--GQPGSKGNNGAPGAAGGPGQPGRP 208


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/59 (28%), Positives = 19/59 (32%)
 Frame = +3

Query: 450 GSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGTPGXPXXRRTD 626
           G   PK    P         P EP S    +P       PP  A + G PG P     D
Sbjct: 171 GEPGPKGPIGPPGPPGQAGAPGEPGSPAKSEPAVPGPPGPPGQAGQQGPPGPPGSNGID 229


>Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical
           protein T05A1.2 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +3

Query: 417 PXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGT 596
           P       +P     P  A P   R       K+       QPGP  G   P      G 
Sbjct: 207 PPGHSDEPKPGQPGQPGRAGPRGPRGVAGIKGKDGAPGSPGQPGPRGGPGEPGQDGAPGQ 266

Query: 597 PGXP 608
           PG P
Sbjct: 267 PGLP 270


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/66 (27%), Positives = 22/66 (33%)
 Frame = +3

Query: 405 LTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAX 584
           L   P    V  +P     P A   P       T P EP +    +P P+    PP    
Sbjct: 105 LPGPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164

Query: 585 RXGTPG 602
             G PG
Sbjct: 165 APGDPG 170


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 453 SDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGTPGXP 608
           SD P  + PPS      +  ++P   +   PGP   +  P+ +   G PG P
Sbjct: 201 SDEPSPSGPPSPGPVDPS--EDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPP 250



 Score = 28.7 bits (61), Expect = 7.7
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 453 SDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGTPGXPXXR 617
           S+ PK ++PPS      +    P    +  PGP PG   P      G PG P  R
Sbjct: 218 SEDPKPSEPPSPGPVDPSDEPSP----SDPPGP-PGPPGPPTRRPPGPPGPPTRR 267


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 15/59 (25%), Positives = 20/59 (33%)
 Frame = +3

Query: 423 ARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAXRXGTP 599
           A Q    PA +  P               P  P +  A +P P P  +PP      G+P
Sbjct: 342 APQPAPAPAAAAAPAGGYQGGAAAGAAAPPPAPAAAAAPEPAPAPAAAPPPAPAAGGSP 400


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/66 (27%), Positives = 22/66 (33%)
 Frame = +3

Query: 405 LTDTPXARQVRXRPAGSDXPKAAKPPSXRTXXXTHPKEPXSQKAXQPGPEPGTSPPAXAX 584
           L   P    V  +P     P A   P       T P EP +    +P P+    PP    
Sbjct: 105 LPGPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164

Query: 585 RXGTPG 602
             G PG
Sbjct: 165 APGDPG 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.129    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,960
Number of Sequences: 27780
Number of extensions: 177592
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2929426640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)