Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A24
         (963 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    35   0.015
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    28   2.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   3.9  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   5.2  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   5.2  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   6.9  

>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 238 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDXNQXXRQQLEK 354
           ENW  +D   D  D ++WE+NW+D D+  DD +   + +L+K
Sbjct: 24  ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 250 TEDADDEDVSV-WEDNWEDDVIQDDXNQXXRQQLEKLKDQKS 372
           TE+A DED SV  E++ E++  +D+     +Q+    K +KS
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKKS 243


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 232 PAENWGTEDADDEDVSVWEDNWEDDVIQDDXNQXXRQQ 345
           P EN   +  D +DVS+  DN   DV QD  N+   +Q
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQ 414


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 244 WGTEDADDEDVSVWEDNWEDDVIQDDXNQXXRQQLEKLKDQK 369
           W  ++   +D SVW   + +D +     +    +LEKL D++
Sbjct: 537 WKIKNGSIDDFSVWRSAFANDALDRLLEKVILPKLEKLMDEE 578


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +1

Query: 244 WGTEDADDEDVSVWEDNWEDDVIQDDXNQXXRQQLEKLKD 363
           +G +D D+ED S  +D ++  + + +  +  R++LEK+ +
Sbjct: 122 YGGDDYDNEDYSEEDDEFDARMEEQEALRLQRKRLEKVSE 161


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 307 RRLPSCLPKPIHLHHQRLLYPNFPR 233
           R+    L + IH HH+RLL+PN  R
Sbjct: 64  RKQAIILAREIH-HHRRLLHPNITR 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,292
Number of Sequences: 5004
Number of extensions: 27467
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)