Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A24
(963 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1186 - 9440805-9440938,9442890-9442986 46 6e-05
01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024 42 7e-04
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 31 1.8
06_03_1150 + 28022633-28023374,28023501-28023565 31 1.8
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 30 3.2
07_03_1325 + 25830838-25831440 29 5.5
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 5.5
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 29 7.3
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 29 7.3
07_03_1160 - 24430240-24431268 29 7.3
12_02_0299 - 17051570-17052474,17053542-17053755 28 9.6
03_01_0515 - 3864796-3865425 28 9.6
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 28 9.6
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.6
>01_01_1186 - 9440805-9440938,9442890-9442986
Length = 76
Score = 45.6 bits (103), Expect = 6e-05
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 238 ENWGTEDADDEDVSVWEDNWEDDVIQDDXNQXXRQQLEKLKDQK 369
+ W ++ DE + WED+W+DD + DD + R++LE+ QK
Sbjct: 32 QEWDDKEDGDEAIQQWEDDWDDDDVNDDFSLQLRKELEECNTQK 75
>01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024
Length = 120
Score = 41.9 bits (94), Expect = 7e-04
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 235 AENWGTEDADDEDVSVWEDNWEDDVIQDDXNQXXRQQLEKL 357
++ W ++ +E V WED+W+DD + DD + R++LE +
Sbjct: 76 SDEWDDKEEGNEAVQQWEDDWDDDDVNDDFSLQLRKELESI 116
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 30.7 bits (66), Expect = 1.8
Identities = 26/85 (30%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Frame = -3
Query: 847 PPLXWXXSRXPXPXX---PGPXGPGX--PXXG-GXPXFPXXL--SPXGWPXRXSRXXPPA 692
PP R P P P P PG P G G P FP SP P + S P A
Sbjct: 94 PPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQASPASPAA 153
Query: 691 PXPXXXXPXSGCRLFFVXLFXAAXY 617
P P C + + A Y
Sbjct: 154 PAPPSPPQPKECLTPLLSMMSCADY 178
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 30.7 bits (66), Expect = 1.8
Identities = 26/85 (30%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Frame = -3
Query: 847 PPLXWXXSRXPXPXX---PGPXGPGX--PXXG-GXPXFPXXL--SPXGWPXRXSRXXPPA 692
PP R P P P P PG P G G P FP SP P + S P A
Sbjct: 94 PPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQASPASPAA 153
Query: 691 PXPXXXXPXSGCRLFFVXLFXAAXY 617
P P C + + A Y
Sbjct: 154 PAPPSPPQPKECLTPLLSMMSCADY 178
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 235 AENWGTEDADDEDVSVWEDNWEDD 306
AEN G +DA DED S E N ED+
Sbjct: 83 AENQGDDDAGDEDASEEEGNDEDE 106
>07_03_1325 + 25830838-25831440
Length = 200
Score = 29.1 bits (62), Expect = 5.5
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +1
Query: 253 EDADDEDVSVWEDNWEDDVIQD 318
+DAD+ED+ W++++ D++ QD
Sbjct: 114 DDADEEDLKEWDEDFVDELDQD 135
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.1 bits (62), Expect = 5.5
Identities = 19/70 (27%), Positives = 23/70 (32%)
Frame = -3
Query: 898 PXFFSXFXPXXXXXPLFPPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPX 719
P ++ P P PP P P P P P P FP L+P P
Sbjct: 218 PPAYAPAKPPTALRPAIPPAAMPKPPSVAPVQP-PQRPPAPATKPPPSFPPQLAPTMPPP 276
Query: 718 RXSRXXPPAP 689
+ PAP
Sbjct: 277 AHAPAETPAP 286
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 28.7 bits (61), Expect = 7.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 238 ENWGTEDADDEDVSVWEDNWEDDVIQDDXNQXXRQQLEKLKDQK 369
ENW ED+D+E+ ED ED+ +D+ + LE D++
Sbjct: 205 ENWMEEDSDEEEE---EDLDEDEDNEDEEDDDEHLDLEDFDDEE 245
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 238 ENWGTEDADDEDVSVWEDNWEDD 306
ENW ED+D ED +++ EDD
Sbjct: 199 ENWMEEDSDSEDEEYLDEDEEDD 221
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.7 bits (61), Expect = 7.3
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPP 695
P PL P ++ P P P GP P P P P G P + PP
Sbjct: 68 PTPGVPPLPNPDVPPMNKPDVPPMPKPDGPPIPPVQPCPDQPPQPKPDG-PPLPNPNQPP 126
Query: 694 APXP 683
P P
Sbjct: 127 QPNP 130
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 9.6
Identities = 23/70 (32%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Frame = -3
Query: 898 PXFFSXFXPXXXXXPLFPPLXWXXSRXPXPXXPGPXGP---GXPXXGGXPXFPXXLSPXG 728
P F P P FPPL P P P P P P P FP SP
Sbjct: 294 PPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPLFPPYPSPP- 352
Query: 727 WPXRXSRXXP 698
P SR P
Sbjct: 353 -PSMYSRKDP 361
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 9.6
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPP 695
P PL PP S P P P P P P P P P + S PP
Sbjct: 62 PPPAAGPLMPPPPPPPSVTSSPPPP-PLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120
Query: 694 APXP 683
A P
Sbjct: 121 AWSP 124
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 289 LPKPIHLHHQRLLYPNFPREILRTRHPLLANXR 191
+P + LHH LL+P FP + +T +PL A+ R
Sbjct: 1 MPPSLSLHHHLLLFP-FPSHV-QTLNPLSASPR 31
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = -3
Query: 847 PPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAPXP 683
PP + P P P P P G P P P P PP P P
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,265,571
Number of Sequences: 37544
Number of extensions: 235887
Number of successful extensions: 647
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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